Megalops cyprinoides

Indo-Pacific tarpon

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fMegCyp1: GCA_013368585.1 fMegCyp1: GCA_013368575.1
ENA fMegCyp1: GCA_013368585.1 fMegCyp1: GCA_013368575.1
UCSC Genome Browser fMegCyp1: GCA_013368585.1 fMegCyp1: GCA_013368575.1

metadata.yaml (view) (edit on github)
species:
  common_name: Indo-Pacific tarpon
  family:
    name: Megalopidae
  genome_size: 1093257451 
  genome_size_method: genomescope
  individuals:
  - short_name: fMegCyp1
  name: Megalops cyprinoides
  order:
    name: Elopiformes
  short_name: fMegCyp
  taxon_id: 118141
  project: [ vgp ]
no copyright, public domain, user:Melanochromis (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fMegCyp1 113.96 Gbp 104.24x 203.1 GiB
10x fMegCyp1 90.23 Gbp 82.54x 44.7 GiB
Bionano fMegCyp1 N/A 426.17x 566.1 MiB
Arima fMegCyp1 86.43 Gbp 79.06x 52.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 10 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMegCyp1 PacBio CLR 113.96 Gbp 104.24x 203.1 GiB
10x 90.23 Gbp 82.54x 44.7 GiB
Bionano N/A 426.17x 566.1 MiB
Arima 86.43 Gbp 79.06x 52.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 10 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 April 2020
fMegCyp1.pri.cur.20200424.fasta.gz (278.7 MiB)

Quality: 13.1 errors/Mb (QV=48.82)

Contigs Scaffolds
NG LG Len LG Len
10 1 47.00 Mbp 1 70.00 Mbp
20 4 40.48 Mbp 3 47.00 Mbp
30 7 33.85 Mbp 5 41.38 Mbp
40 11 27.65 Mbp 8 39.13 Mbp
50 15 23.34 Mbp 11 37.50 Mbp
60 20 20.87 Mbp 14 34.50 Mbp
70 26 14.28 Mbp 18 29.99 Mbp
80 38 6.81 Mbp 21 27.87 Mbp
90 0 0
100 0 0
0.877x 269 0.96 Gbp 206 0.96 Gbp
NG based on genome size 1.09 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 April 2020
fMegCyp1.alt.cur.20200424.fasta.gz (271.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 64 1.27 Mbp 64 1.27 Mbp
20 170 0.87 Mbp 170 0.87 Mbp
30 313 0.67 Mbp 313 0.67 Mbp
40 503 490.41 Kbp 503 490.41 Kbp
50 764 353.49 Kbp 764 353.49 Kbp
60 1142 230.20 Kbp 1142 230.20 Kbp
70 1769 129.84 Kbp 1769 129.84 Kbp
80 3039 56.39 Kbp 3039 56.39 Kbp
90 0 0
100 0 0
0.842x 4336 0.92 Gbp 4333 0.92 Gbp
NG based on genome size 1.09 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMegCyp1.MT.20191002.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.