Martes martes

European pine marten

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMarMar
  name: Martes martes
  taxon_id: 29065
  common_name: European pine marten
  order:
    name: Carnivora
  family:
    name: Mustelidae
  individuals:
    - short_name: mMarMar1
      biosample_id: SAMEA14268932
      sex: male
  genome_size: 2880210000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMarMar1 90.47 Gbp 31.41x 39.7 GiB
Arima mMarMar1 296.53 Gbp 102.96x 90.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 14 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMarMar1 PacBio HiFi (.bam) 90.47 Gbp 31.41x 39.7 GiB
Arima 296.53 Gbp 102.96x 90.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 14 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 12 September 2023
mMarMar1.pri.cur.20230912.fasta.gz (711.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 68 3.38 Mbp 2 206.14 Mbp
20 165 2.65 Mbp 3 196.26 Mbp
30 288 2.11 Mbp 5 165.75 Mbp
40 439 1.73 Mbp 7 146.29 Mbp
50 628 1.37 Mbp 9 139.28 Mbp
60 867 1.06 Mbp 11 116.35 Mbp
70 1193 0.73 Mbp 14 93.66 Mbp
80 1709 408.61 Kbp 17 65.21 Mbp
90 0 0
100 0 0
0.863x 2727 2.48 Gbp 477 2.48 Gbp
NG based on genome size 2.88 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 12 September 2023
mMarMar1.alt.cur.20230912.fasta.gz (371.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 329 0.59 Mbp 329 0.59 Mbp
20 982 344.36 Kbp 982 344.36 Kbp
30 2107 185.33 Kbp 2107 185.33 Kbp
40 5059 48.65 Kbp 5059 48.65 Kbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.451x 10046 1.30 Gbp 10046 1.30 Gbp
NG based on genome size 2.88 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 17 August 2023
mMarMar1.MT.20230817.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.