Lynx canadensis

Canada lynx

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mLynCan4: GCA_007474595.2 mLynCan4: GCA_007474575.2
ENA mLynCan4: GCA_007474595.2 mLynCan4: GCA_007474575.2
UCSC Genome Browser mLynCan4: GCA_007474595.2 mLynCan4: GCA_007474575.2

metadata.yaml (view) (edit on github)
species:
  short_name: mLynCan
  name: Lynx canadensis
  taxon_id: 61383
  common_name: Canada lynx
  order:
    name: Carnivora
  family:
    name: Felidae
  individuals:
    - short_name: mLynCan4
  genome_size: 2471525315
  genome_size_method:
  project: [ vgp ]
CC BY 2.0 Keith Williams (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mLynCan4 179.91 Gbp 72.79x 311.2 GiB
10x mLynCan4 318.35 Gbp 128.81x 194.7 GiB
Bionano mLynCan4 N/A 585.59x 2.3 GiB
Arima mLynCan4 232.95 Gbp 94.25x 114.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.47 Gbp.
Last upload on 16 August 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mLynCan4 PacBio CLR 179.91 Gbp 72.79x 311.2 GiB
10x 318.35 Gbp 128.81x 194.7 GiB
Bionano N/A 585.59x 2.3 GiB
Arima 232.95 Gbp 94.25x 114.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.47 Gbp.
Last upload on 16 August 2018.
Assemblies
Individual 4 Primary Assembly
Version assembly_curated from 8 June 2020
mLynCan4.pri.cur.20200608.fasta.gz (700.1 MiB)

Quality: 235.6 errors/Mb (QV=36.28)

Contigs Scaffolds
NG LG Len LG Len
10 9 23.42 Mbp 1 220.95 Mbp
20 23 14.91 Mbp 2 205.93 Mbp
30 42 11.68 Mbp 3 168.99 Mbp
40 66 9.13 Mbp 4 158.93 Mbp
50 97 7.41 Mbp 6 147.28 Mbp
60 136 5.66 Mbp 8 139.83 Mbp
70 188 3.86 Mbp 10 115.72 Mbp
80 270 2.37 Mbp 12 93.55 Mbp
90 421 1.10 Mbp 15 69.07 Mbp
100 0 0
0.973x 896 2.41 Gbp 54 2.41 Gbp
NG based on genome size 2.47 Gbp.
Individual 4 Alternate Assembly
Version assembly_curated from 3 April 2020
mLynCan4.alt.cur.20200403.fasta.gz (425.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 596 292.78 Kbp 596 292.78 Kbp
20 1679 186.71 Kbp 1679 186.71 Kbp
30 3328 123.20 Kbp 3327 123.27 Kbp
40 5802 82.03 Kbp 5801 82.06 Kbp
50 9660 50.00 Kbp 9657 50.01 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.573x 15046 1.42 Gbp 15041 1.42 Gbp
NG based on genome size 2.47 Gbp.
Individual 4 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mLynCan4.MT.20191003.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.