Loxodonta africana

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Resource Primary Assembly Alternate Assembly
GenBank mLoxAfr1: GCA_030014295.1 mLoxAfr1: GCA_030020305.1
ENA mLoxAfr1: GCA_030014295.1 mLoxAfr1: GCA_030020305.1
UCSC Genome Browser mLoxAfr1: GCA_030014295.1 mLoxAfr1: GCA_030020305.1

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mLoxAfr1 165.00 Gbp N/A 135.2 GiB
Arima mLoxAfr1 221.50 Gbp N/A 114.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 14 November 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mLoxAfr1 PacBio HiFi (.fq) 165.00 Gbp N/A 135.2 GiB
Arima 221.50 Gbp N/A 114.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 14 November 2022.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 9 December 2022
mLoxAfr1.HiC.hap1.20221209.fasta.gz (1.0 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 172.78 Mbp 0 0.65 Gbp
20 4 109.23 Mbp 1 240.06 Mbp
30 8 87.21 Mbp 3 141.17 Mbp
40 12 85.90 Mbp 5 134.26 Mbp
50 17 75.91 Mbp 8 116.14 Mbp
60 22 54.04 Mbp 12 92.87 Mbp
70 30 37.83 Mbp 16 82.96 Mbp
80 41 23.64 Mbp 20 80.05 Mbp
90 93 2.12 Mbp 29 5.33 Mbp
100 1253 10.57 Kbp 1084 10.57 Kbp
1.000x 1254 3.57 Gbp 1085 3.58 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 3 May 2023
mLoxAfr1.hap2.cur.20230503.fasta.gz (0.9 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 176.55 Mbp 2 233.67 Mbp
20 5 131.74 Mbp 4 193.76 Mbp
30 7 114.14 Mbp 5 178.71 Mbp
40 11 88.80 Mbp 8 136.92 Mbp
50 15 82.65 Mbp 11 119.60 Mbp
60 21 50.50 Mbp 14 96.74 Mbp
70 29 38.53 Mbp 18 84.11 Mbp
80 41 24.12 Mbp 22 80.49 Mbp
90 74 4.90 Mbp 27 50.54 Mbp
100 1110 12.35 Kbp 879 12.35 Kbp
1.000x 1110 3.54 Gbp 879 3.54 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 10 February 2023
mLoxAfr1.MT.20230210.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.