Limanda limanda

common dab

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fLimLim
  name: Limanda limanda
  taxon_id: 27771
  common_name: common dab
  order:
    name: Pleuronectiformes
  family:
    name: Pleuronectidae
  individuals:
    - short_name: fLimLim1
      biosample_id: SAMEA112765706
      sex:
  genome_size: 792180000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fLimLim1 70.14 Gbp 88.54x 27.2 GiB
Arima fLimLim1 88.92 Gbp 112.25x 25.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.79 Gbp.
Last upload on 17 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fLimLim1 PacBio HiFi (.bam) 70.14 Gbp 88.54x 27.2 GiB
Arima 88.92 Gbp 112.25x 25.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.79 Gbp.
Last upload on 17 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 November 2023
fLimLim1.pri.cur.20231101.fasta.gz (185.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 7 10.15 Mbp 3 33.91 Mbp
20 16 7.84 Mbp 5 31.30 Mbp
30 28 6.35 Mbp 8 30.29 Mbp
40 43 3.88 Mbp 10 29.10 Mbp
50 66 3.03 Mbp 13 28.28 Mbp
60 96 2.22 Mbp 16 26.64 Mbp
70 141 1.44 Mbp 19 23.30 Mbp
80 224 0.60 Mbp 23 12.29 Mbp
90 517 74.88 Kbp 246 81.23 Kbp
100 0 0
0.906x 614 0.72 Gbp 339 0.72 Gbp
NG based on genome size 0.79 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 November 2023
fLimLim1.alt.cur.20231101.fasta.gz (185.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 2.41 Mbp 24 2.41 Mbp
20 65 1.58 Mbp 65 1.58 Mbp
30 123 1.20 Mbp 123 1.20 Mbp
40 200 0.89 Mbp 200 0.89 Mbp
50 306 0.63 Mbp 306 0.63 Mbp
60 467 387.82 Kbp 467 387.82 Kbp
70 769 187.14 Kbp 769 187.14 Kbp
80 1658 44.20 Kbp 1658 44.20 Kbp
90 0 0
100 0 0
0.844x 2962 0.67 Gbp 2962 0.67 Gbp
NG based on genome size 0.79 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 August 2023
fLimLim1.MT.20230820.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.