Larus fuscus

Lesser black-backed gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bLarFus
  name: Larus fuscus
  taxon_id: 8915
  common_name: Lesser black-backed gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bLarFus1
      biosample_id: SAMEA112468039
      sex: female
  genome_size: 1432770000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bLarFus1 58.32 Gbp 40.70x 32.3 GiB
Arima bLarFus1 76.24 Gbp 53.21x 22.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 8 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLarFus1 PacBio HiFi (.bam) 58.32 Gbp 40.70x 32.3 GiB
Arima 76.24 Gbp 53.21x 22.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 8 February 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 3 February 2024
bLarFus1.pri.cur.20240203.fasta.gz (363.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 9.09 Mbp 1 218.47 Mbp
20 30 6.85 Mbp 2 167.92 Mbp
30 53 5.45 Mbp 3 128.68 Mbp
40 83 4.21 Mbp 4 94.81 Mbp
50 122 3.24 Mbp 6 83.13 Mbp
60 172 2.47 Mbp 8 58.10 Mbp
70 239 1.81 Mbp 10 49.40 Mbp
80 354 0.74 Mbp 18 9.36 Mbp
90 1000 82.00 Kbp 491 88.71 Kbp
100 0 0
0.924x 1904 1.32 Gbp 1367 1.32 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 3 February 2024
bLarFus1.alt.cur.20240203.fasta.gz (366.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 58 1.99 Mbp 58 1.99 Mbp
20 141 1.53 Mbp 141 1.53 Mbp
30 248 1.17 Mbp 248 1.17 Mbp
40 390 0.90 Mbp 390 0.90 Mbp
50 575 0.68 Mbp 575 0.68 Mbp
60 822 497.59 Kbp 822 497.59 Kbp
70 1184 309.92 Kbp 1184 309.92 Kbp
80 1869 135.65 Kbp 1869 135.65 Kbp
90 4141 31.35 Kbp 4141 31.35 Kbp
100 0 0
0.941x 7404 1.35 Gbp 7404 1.35 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 December 2023
bLarFus1.MT.20231223.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.