Lacerta agilis

sand lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank rLacAgi1: GCA_009819535.1 rLacAgi1: GCA_009819545.1
ENA rLacAgi1: GCA_009819535.1 rLacAgi1: GCA_009819545.1
UCSC Genome Browser rLacAgi1: GCA_009819535.1 rLacAgi1: GCA_009819545.1

metadata.yaml (view) (edit on github)
species:
  common_name: sand lizard
  family:
    name: Lacertidae
  genome_size: 2000000000
  genome_size_method: null
  individuals:
  - short_name: rLacAgi1
  name: Lacerta agilis
  order:
    name: Squamata
  short_name: rLacAgi
  taxon_id: 80427
  project: [ vgp ]
CC BY-SA 3.0 Quartl (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR rLacAgi1 126.83 Gbp 63.42x 221.2 GiB
10x rLacAgi1 149.80 Gbp 74.90x 76.3 GiB
Bionano rLacAgi1 N/A 496.89x 1.7 GiB
Arima rLacAgi1 179.51 Gbp 89.76x 89.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.00 Gbp.
Last upload on 16 September 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rLacAgi1 PacBio CLR 126.83 Gbp 63.42x 221.2 GiB
10x 149.80 Gbp 74.90x 76.3 GiB
Bionano N/A 496.89x 1.7 GiB
Arima 179.51 Gbp 89.76x 89.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.00 Gbp.
Last upload on 16 September 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 September 2019
rLacAgi1.pri.cur.20190924.fasta.gz (406.2 MiB)

Quality: 190.0 errors/Mb (QV=37.21)

Contigs Scaffolds
NG LG Len LG Len
10 7 22.14 Mbp 1 120.75 Mbp
20 20 11.49 Mbp 3 100.70 Mbp
30 42 7.59 Mbp 5 95.50 Mbp
40 73 5.65 Mbp 7 84.10 Mbp
50 118 3.37 Mbp 10 61.60 Mbp
60 193 2.03 Mbp 13 51.72 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.694x 407 1.39 Gbp 28 1.39 Gbp
NG based on genome size 2.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 September 2019
rLacAgi1.alt.cur.20190924.fasta.gz (427.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 148 0.98 Mbp 148 0.98 Mbp
20 402 0.64 Mbp 402 0.64 Mbp
30 773 454.06 Kbp 773 454.06 Kbp
40 1321 283.92 Kbp 1321 283.92 Kbp
50 2398 115.11 Kbp 2398 115.11 Kbp
60 5159 50.84 Kbp 5159 50.84 Kbp
70 10811 22.60 Kbp 10811 22.60 Kbp
80 0 0
90 0 0
100 0 0
0.715x 12662 1.43 Gbp 12660 1.43 Gbp
NG based on genome size 2.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller_nanopore from 23 April 2020
rLacAgi1.MT.20200423.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.