Hyperoodon ampullatus

northern bottlenose whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mHypAmp2: GCA_949752795.1 mHypAmp2: GCA_949752845.1
ENA mHypAmp2: GCA_949752795.1 mHypAmp2: GCA_949752845.1
UCSC Genome Browser mHypAmp2: GCA_949752795.1 mHypAmp2: GCA_949752845.1

metadata.yaml (view) (edit on github)
species:
  short_name: mHypAmp
  name: Hyperoodon ampullatus
  taxon_id: 48744
  common_name: northern bottlenose whale
  order:
    name: Cetacea
  family:
    name: Hyperoodontidae
  individuals:
    - short_name: mHypAmp1
      biosample_id: SAMEA10839124
      sex: female
    - short_name: mHypAmp2
      biosample_id: SAMEA10839125
      sex: female
  genome_size: 3217620000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mHypAmp2 90.49 Gbp 28.12x 305.7 GiB
Arima mHypAmp1 464.26 Gbp 144.29x 141.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 13 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mHypAmp1 Arima 464.26 Gbp 144.29x 141.9 GiB
mHypAmp2 PacBio HiFi (.bam) 90.49 Gbp 28.12x 305.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 13 February 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 23 March 2023
mHypAmp2.pri.cur.20230323.fasta.gz (756.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 7.37 Mbp 1 199.77 Mbp
20 83 5.60 Mbp 3 176.60 Mbp
30 147 4.58 Mbp 5 147.16 Mbp
40 226 3.49 Mbp 7 117.53 Mbp
50 331 2.67 Mbp 10 106.41 Mbp
60 469 2.00 Mbp 13 90.64 Mbp
70 661 1.40 Mbp 17 78.29 Mbp
80 967 0.78 Mbp 51 1.87 Mbp
90 0 0
100 0 0
0.879x 1855 2.83 Gbp 757 2.83 Gbp
NG based on genome size 3.22 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 23 March 2023
mHypAmp2.alt.cur.20230323.fasta.gz (678.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 331 0.63 Mbp 331 0.63 Mbp
20 997 392.69 Kbp 997 392.69 Kbp
30 1982 274.76 Kbp 1982 274.76 Kbp
40 3390 190.50 Kbp 3390 190.50 Kbp
50 5467 125.45 Kbp 5467 125.45 Kbp
60 8775 76.03 Kbp 8775 76.03 Kbp
70 14751 37.80 Kbp 14751 37.80 Kbp
80 0 0
90 0 0
100 0 0
0.770x 23401 2.48 Gbp 23401 2.48 Gbp
NG based on genome size 3.22 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.