Homo sapiens

human

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Maternal Assembly Paternal Assembly
GenBank mHomSap3: GCA_016695395.2 mHomSap3: GCA_016700455.2
ENA mHomSap3: GCA_016695395.2 mHomSap3: GCA_016700455.2
UCSC Genome Browser mHomSap3: GCA_016695395.2 mHomSap3: GCA_016700455.2

metadata.yaml (view) (edit on github)
species:
  common_name: human
  family:
    name: Hominidae
  genome_size: 3200000000
  genome_size_method: null
  individuals:
  - short_name: mHomSap3
  - short_name: mHomSap1
  - short_name: mHomSap2
  name: Homo sapiens
  order:
    name: Primates
  short_name: mHomSap
  taxon_id: 9606
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mHomSap3 234.68 Gbp 73.34x 402.6 GiB
PacBio HiFi (.bam) mHomSap1 73.38 Gbp 22.93x 53.1 GiB
mHomSap2 67.66 Gbp 21.14x 48.6 GiB
mHomSap3 61.47 Gbp 19.21x 47.0 GiB
10x mHomSap1 252.34 Gbp 78.86x 123.4 GiB
mHomSap2 364.72 Gbp 113.97x 169.7 GiB
mHomSap3 320.38 Gbp 100.12x 155.6 GiB
Bionano mHomSap1 N/A 177.21x 0.9 GiB
mHomSap2 N/A 170.46x 888.0 MiB
mHomSap3 N/A 168.63x 873.8 MiB
Arima mHomSap1 179.36 Gbp 56.05x 99.7 GiB
mHomSap2 189.99 Gbp 59.37x 104.4 GiB
mHomSap3 246.06 Gbp 76.89x 142.9 GiB
Illumina mHomSap1 207.90 Gbp 64.97x 102.2 GiB
mHomSap2 232.13 Gbp 72.54x 114.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.20 Gbp.
Last upload on 4 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mHomSap1 PacBio HiFi (.bam) 73.38 Gbp 22.93x 53.1 GiB
10x 252.34 Gbp 78.86x 123.4 GiB
Bionano N/A 177.21x 0.9 GiB
Arima 179.36 Gbp 56.05x 99.7 GiB
Illumina 207.90 Gbp 64.97x 102.2 GiB
mHomSap2 PacBio HiFi (.bam) 67.66 Gbp 21.14x 48.6 GiB
10x 364.72 Gbp 113.97x 169.7 GiB
Bionano N/A 170.46x 888.0 MiB
Arima 189.99 Gbp 59.37x 104.4 GiB
Illumina 232.13 Gbp 72.54x 114.2 GiB
mHomSap3 PacBio CLR 234.68 Gbp 73.34x 402.6 GiB
PacBio HiFi (.bam) 61.47 Gbp 19.21x 47.0 GiB
10x 320.38 Gbp 100.12x 155.6 GiB
Bionano N/A 168.63x 873.8 MiB
Arima 246.06 Gbp 76.89x 142.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.20 Gbp.
Last upload on 4 May 2022.
Assemblies
Individual 3 Maternal Assembly
Version assembly_curated from 16 July 2020
mHomSap3.mat.cur.20200716.fasta.gz (826.5 MiB)

Quality: 51.1 errors/Mb (QV=42.92)

Contigs Scaffolds
NG LG Len LG Len
10 6 38.84 Mbp 1 222.62 Mbp
20 17 26.64 Mbp 2 195.44 Mbp
30 31 18.36 Mbp 4 177.04 Mbp
40 51 14.19 Mbp 6 155.51 Mbp
50 77 10.21 Mbp 8 142.34 Mbp
60 113 7.78 Mbp 11 129.95 Mbp
70 166 4.76 Mbp 14 87.69 Mbp
80 274 1.78 Mbp 17 78.23 Mbp
90 1702 42.83 Kbp 368 62.34 Kbp
100 0 0
0.904x 2166 2.89 Gbp 949 2.90 Gbp
NG based on genome size 3.20 Gbp.
Individual 3 Paternal Assembly
Version assembly_curated from 16 July 2020
mHomSap3.pat.cur.20200716.fasta.gz (786.0 MiB)

Quality: 56.7 errors/Mb (QV=42.46)

Contigs Scaffolds
NG LG Len LG Len
10 7 33.49 Mbp 1 223.18 Mbp
20 18 26.07 Mbp 2 196.00 Mbp
30 32 21.48 Mbp 4 176.67 Mbp
40 50 16.31 Mbp 6 154.44 Mbp
50 74 11.17 Mbp 8 131.33 Mbp
60 112 6.83 Mbp 11 112.07 Mbp
70 172 3.83 Mbp 14 79.62 Mbp
80 352 0.73 Mbp 19 55.55 Mbp
90 0 0
100 0 0
0.854x 2166 2.73 Gbp 994 2.74 Gbp
NG based on genome size 3.20 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 August 2019
mHomSap3.MT.20190816.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.