Hemiprocne comata

whiskered treeswift

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bHemCom1: GCA_020745705.1 bHemCom1: GCA_020745695.1
ENA bHemCom1: GCA_020745705.1 bHemCom1: GCA_020745695.1
UCSC Genome Browser bHemCom1: GCA_020745705.1 bHemCom1: GCA_020745695.1

metadata.yaml (view) (edit on github)
species:
  common_name: whiskered treeswift
  family:
    name: Apodidae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: bHemCom1
  name: Hemiprocne comata
  order:
    name: Apodiformes
  short_name: bHemCom
  taxon_id: 243314
  project: [ vgp ]
CC BY-NC-SA 2.0 Nick Athanas (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bHemCom1 79.87 Gbp 79.87x 139.8 GiB
10x bHemCom1 73.94 Gbp 73.94x 37.3 GiB
Bionano bHemCom1 N/A 1112.43x 2.1 GiB
Arima bHemCom1 130.36 Gbp 130.36x 73.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 14 July 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bHemCom1 PacBio CLR 79.87 Gbp 79.87x 139.8 GiB
10x 73.94 Gbp 73.94x 37.3 GiB
Bionano N/A 1112.43x 2.1 GiB
Arima 130.36 Gbp 130.36x 73.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 14 July 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 September 2021
bHemCom1.pri.cur.20210924.fasta.gz (337.3 MiB)

Quality: 31.3 errors/Mb (QV=45.04)

Contigs Scaffolds
NG LG Len LG Len
10 2 44.32 Mbp 0 218.41 Mbp
20 4 38.87 Mbp 0 218.41 Mbp
30 7 35.24 Mbp 1 165.99 Mbp
40 10 30.02 Mbp 2 123.38 Mbp
50 13 25.64 Mbp 2 123.38 Mbp
60 18 20.23 Mbp 4 81.50 Mbp
70 23 17.86 Mbp 5 69.46 Mbp
80 29 13.81 Mbp 7 39.03 Mbp
90 39 8.65 Mbp 10 23.49 Mbp
100 54 4.40 Mbp 14 20.00 Mbp
1.155x 363 1.15 Gbp 145 1.16 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 September 2021
bHemCom1.alt.cur.20210924.fasta.gz (307.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 17 4.65 Mbp 17 4.65 Mbp
20 41 3.69 Mbp 41 3.69 Mbp
30 72 2.98 Mbp 72 2.98 Mbp
40 108 2.51 Mbp 108 2.51 Mbp
50 154 1.94 Mbp 154 1.94 Mbp
60 213 1.50 Mbp 213 1.50 Mbp
70 289 1.17 Mbp 289 1.17 Mbp
80 388 0.87 Mbp 388 0.87 Mbp
90 546 474.16 Kbp 546 474.16 Kbp
100 959 98.59 Kbp 959 98.59 Kbp
1.053x 2406 1.05 Gbp 2405 1.05 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
bHemCom1.MT.20191204.fasta.gz (5.1 KiB)

Quality: not computed
Assembly Metadata
bHemCom1_metadata.yml (view)
samples:
- biomaterial_provider: Smithsonian
  bioproject_accession: PRJNA516733
  birth_date: ''
  birth_location: ''
  breed: ''
  collected_by: Ross  C. A.; Et Al.
  collection_date: 05/10/1989
  common_name: whiskered_treeswift
  description: 'Field #(s): HERP 181149; Tissue #: B03790; Preparation: Skin: Whole;
    Skeleton: Partial: trunk; Weight: 25 g; Status: Collection'
  dev_stage: adult
  geo_loc_name: Barrio Via  Sitio Hot Springs  Baggao Mun., Luzon; Cagayan, Philippines
  isolate: bHemCom1
  lat_lon: 17.85 N 121.98 E
  organism: Hemiprocne comata
  sex: female
  specimen_voucher: '607338'
  store_cond: -80C
  taxon_Id: '243314'
  tissue: Unknown
  treatment: ''
  tube_id: bHemCom1.Uk1
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.