Gymnoscopelus braueri

Brauer's lanternfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fGymBra
  name: Gymnoscopelus braueri
  taxon_id: 948025
  common_name: Brauer's lanternfish
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fGymBra2
      biosample_id: SAMEA12815494
      sex:
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fGymBra2 41.93 Gbp 21.99x 27.9 GiB
Arima fGymBra2 250.32 Gbp 131.26x 73.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 18 July 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fGymBra2 PacBio HiFi (.bam) 41.93 Gbp 21.99x 27.9 GiB
Arima 250.32 Gbp 131.26x 73.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 18 July 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 16 August 2023
fGymBra2.pri.cur.20230816.fasta.gz (373.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 71 2.00 Mbp 4 59.46 Mbp
20 187 1.41 Mbp 7 58.13 Mbp
30 341 1.08 Mbp 10 56.69 Mbp
40 547 0.79 Mbp 14 54.16 Mbp
50 833 0.56 Mbp 17 51.96 Mbp
60 1279 312.52 Kbp 21 47.90 Mbp
70 2484 68.47 Kbp 106 193.87 Kbp
80 0 0
90 0 0
100 0 0
0.717x 3380 1.37 Gbp 676 1.37 Gbp
NG based on genome size 1.91 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 16 August 2023
fGymBra2.alt.cur.20230816.fasta.gz (354.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 229 0.59 Mbp 229 0.59 Mbp
20 643 372.20 Kbp 642 372.43 Kbp
30 1264 258.66 Kbp 1263 258.67 Kbp
40 2172 173.85 Kbp 2170 174.04 Kbp
50 3561 107.15 Kbp 3558 107.26 Kbp
60 6109 50.41 Kbp 6105 50.43 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.671x 10799 1.28 Gbp 10794 1.28 Gbp
NG based on genome size 1.91 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 19 July 2023
fGymBra2.MT.20230719.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.