Gopherus evgoodei

Goode's thornscrub tortoise

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank rGopEvg1: GCA_007399415.1 rGopEvg1: GCA_007399395.1
ENA rGopEvg1: GCA_007399415.1 rGopEvg1: GCA_007399395.1
UCSC Genome Browser rGopEvg1: GCA_007399415.1 rGopEvg1: GCA_007399395.1

metadata.yaml (view) (edit on github)
species:
  short_name: rGopEvg
  name: Gopherus evgoodei
  taxon_id: 1825980
  common_name: Goode's thornscrub tortoise
  order:
    name: Testudines
  family:
    name: Testudinidae
  individuals:
    - short_name: rGopEvg1
  genome_size: 2684436481
  genome_size_method:
  project: [ vgp ]
CC BY 4.0 Edwards et al. (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR rGopEvg1 156.21 Gbp 58.19x 271.8 GiB
10x rGopEvg1 300.39 Gbp 111.90x 138.7 GiB
Bionano rGopEvg1 N/A 370.34x 1.7 GiB
Arima rGopEvg1 186.79 Gbp 69.58x 100.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.68 Gbp.
Last upload on 21 June 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rGopEvg1 PacBio CLR 156.21 Gbp 58.19x 271.8 GiB
10x 300.39 Gbp 111.90x 138.7 GiB
Bionano N/A 370.34x 1.7 GiB
Arima 186.79 Gbp 69.58x 100.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.68 Gbp.
Last upload on 21 June 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 3 June 2019
rGopEvg1.pri.cur.20190603.fasta.gz (655.9 MiB)

Quality: 145.9 errors/Mb (QV=38.36)

Contigs Scaffolds
NG LG Len LG Len
10 5 35.22 Mbp 0 370.34 Mbp
20 15 24.11 Mbp 1 299.45 Mbp
30 29 16.81 Mbp 2 225.14 Mbp
40 47 13.53 Mbp 4 147.43 Mbp
50 69 10.52 Mbp 6 131.61 Mbp
60 101 6.90 Mbp 8 108.93 Mbp
70 149 4.21 Mbp 11 44.29 Mbp
80 260 1.12 Mbp 21 17.27 Mbp
90 0 0
100 0 0
0.845x 944 2.27 Gbp 382 2.30 Gbp
NG based on genome size 2.68 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 31 January 2019
rGopEvg1.alt.cur.20190131.fasta.gz (582.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 130 1.53 Mbp 130 1.53 Mbp
20 339 1.10 Mbp 339 1.10 Mbp
30 624 0.81 Mbp 624 0.81 Mbp
40 1015 0.58 Mbp 1015 0.58 Mbp
50 1583 385.94 Kbp 1583 385.94 Kbp
60 2546 194.85 Kbp 2546 194.85 Kbp
70 5712 41.51 Kbp 5712 41.51 Kbp
80 0 0
90 0 0
100 0 0
0.731x 8736 1.96 Gbp 8736 1.96 Gbp
NG based on genome size 2.68 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
rGopEvg1.MT.20191002.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.