Gobius niger

black goby

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fGobNig1: GCA_951799975.1 fGobNig1: GCA_951799965.1
ENA fGobNig1: GCA_951799975.1 fGobNig1: GCA_951799965.1
UCSC Genome Browser fGobNig1: GCA_951799975.1 fGobNig1: GCA_951799965.1

metadata.yaml (view) (edit on github)
species:
  short_name: fGobNig
  name: Gobius niger
  taxon_id: 85417
  common_name: black goby
  order:
    name: Perciformes
  family:
    name: Gobiidae
  individuals:
    - short_name: fGobNig1
      biosample_id: SAMEA13854149
      sex:
  genome_size: 987780000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fGobNig1 26.30 Gbp 26.63x 16.7 GiB
Arima fGobNig1 127.15 Gbp 128.72x 37.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.99 Gbp.
Last upload on 19 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fGobNig1 PacBio HiFi (.bam) 26.30 Gbp 26.63x 16.7 GiB
Arima 127.15 Gbp 128.72x 37.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.99 Gbp.
Last upload on 19 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 August 2023
fGobNig1.pri.cur.20230816.fasta.gz (242.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 7.63 Mbp 2 47.76 Mbp
20 26 5.74 Mbp 4 42.85 Mbp
30 45 4.50 Mbp 7 39.69 Mbp
40 69 3.66 Mbp 9 38.09 Mbp
50 100 2.87 Mbp 12 34.94 Mbp
60 139 2.19 Mbp 15 31.91 Mbp
70 197 1.29 Mbp 18 29.98 Mbp
80 322 486.93 Kbp 21 28.53 Mbp
90 0 0
100 0 0
0.881x 934 0.87 Gbp 298 0.87 Gbp
NG based on genome size 0.99 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 August 2023
fGobNig1.alt.cur.20230816.fasta.gz (235.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 51 1.45 Mbp 51 1.45 Mbp
20 132 1.05 Mbp 132 1.05 Mbp
30 237 0.83 Mbp 237 0.83 Mbp
40 376 0.62 Mbp 376 0.62 Mbp
50 564 449.97 Kbp 564 449.97 Kbp
60 829 302.24 Kbp 829 302.24 Kbp
70 1262 169.36 Kbp 1262 169.36 Kbp
80 2213 60.58 Kbp 2213 60.58 Kbp
90 0 0
100 0 0
0.849x 3523 0.84 Gbp 3523 0.84 Gbp
NG based on genome size 0.99 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 May 2023
fGobNig1.MT.20230505.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.