Glossophaga mutica

Merriam's long-tongued bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mGloMut
  name: Glossophaga mutica
  taxon_id: 2994998
  common_name: Merriam's long-tongued bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
  - mGloMut1
  genome_size: 2435220000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mGloMut1 77.22 Gbp 31.71x 55.5 GiB
Arima mGloMut1 146.90 Gbp 60.32x 79.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.44 Gbp.
Last upload on 5 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mGloMut1 PacBio HiFi (.fq) 77.22 Gbp 31.71x 55.5 GiB
Arima 146.90 Gbp 60.32x 79.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.44 Gbp.
Last upload on 5 December 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 5 December 2023
mGloMut1.HiC.hap1.decontam.20231205.fasta.gz (586.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 219.48 Mbp 1 224.30 Mbp
20 3 167.70 Mbp 2 223.83 Mbp
30 4 143.34 Mbp 3 219.48 Mbp
40 6 89.28 Mbp 4 213.30 Mbp
50 8 77.03 Mbp 6 169.73 Mbp
60 11 60.44 Mbp 7 143.34 Mbp
70 15 55.08 Mbp 9 116.65 Mbp
80 20 36.18 Mbp 10 115.37 Mbp
90 29 18.09 Mbp 13 66.63 Mbp
100 127 1.87 Kbp 91 1.87 Kbp
1.000x 127 2.16 Gbp 91 2.16 Gbp
NG based on genome size 2.44 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 5 December 2023
mGloMut1.HiC.hap2.decontam.20231205.fasta.gz (586.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 131.90 Mbp 1 227.85 Mbp
20 3 124.33 Mbp 2 222.90 Mbp
30 5 106.71 Mbp 3 217.72 Mbp
40 7 102.56 Mbp 4 213.11 Mbp
50 10 72.10 Mbp 6 169.57 Mbp
60 13 56.85 Mbp 7 143.03 Mbp
70 18 46.98 Mbp 9 116.23 Mbp
80 23 36.32 Mbp 10 115.28 Mbp
90 31 21.01 Mbp 12 97.15 Mbp
100 112 1.87 Kbp 75 1.87 Kbp
1.000x 112 2.16 Gbp 75 2.16 Gbp
NG based on genome size 2.44 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 13 September 2023
mGloMut1.MT.20230913.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mGloMut1_hap1.yml (view)
species: Glossophaga mutica
specimen: mGloMut1
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap1
hap1: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/mGloMut1.HiC.hap1.20230829.fasta.gz
hap2: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/mGloMut1.HiC.hap2.20230829.fasta.gz
pretext_hap1: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mGloMut1_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mGloMut1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/evaluation/merqury/mGloMut1_png/
pacbio_read_dir: s3://genomeark/species/Glossophaga_mutica/mGloMut1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Glossophaga_mutica/mGloMut1/genomic_data/arima/
mito: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_MT_rockefeller/mGloMut1.MT.20230913.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mGloMut1, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was TruSeq. 
assembly_vgp_HiC_2.0/mGloMut1_hap2.yml (view)
species: Glossophaga mutica
specimen: mGloMut1
projects: 
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
haplotype_to_curate: hap2
hap1: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/mGloMut1.HiC.hap1.20230829.fasta.gz
hap2: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/mGloMut1.HiC.hap2.20230829.fasta.gz
pretext_hap1: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mGloMut1_hap1_s2.pretext
pretext_hap2: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/mGloMut1_hap2_s2.pretext
kmer_spectra_img: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_vgp_HiC_2.0/evaluation/merqury/mGloMut1_png/
pacbio_read_dir: s3://genomeark/species/Glossophaga_mutica/mGloMut1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Glossophaga_mutica/mGloMut1/genomic_data/arima/
mito: s3://genomeark/species/Glossophaga_mutica/mGloMut1/assembly_MT_rockefeller/mGloMut1.MT.20230913.fasta.gz
pipeline: 
  - hifiasm (0.19.3+galaxy0)
  - yahs (1.2a.2+galaxy1)
notes: This was a Hifiasm-HiC assembly of mGloMut1, resulting in two complete haplotypes. HiC scaffolding was performed with YaHS.  The HiC prep kit used was TruSeq. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.