Gardnerycteris keenani

Keenan's hairy-nosed bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mGarKee
  name: Gardnerycteris keenani
  taxon_id: 2358194
  common_name: Keenan's hairy-nosed bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
  - mGarKee1
  genome_size: 2141820000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mGarKee1 21.75 Gbp 10.15x 76.7 GiB
PacBio HiFi (.bam) mGarKee1 91.15 Gbp 42.56x 321.4 GiB
Arima mGarKee1 123.97 Gbp 57.88x 67.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.14 Gbp.
Last upload on 13 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mGarKee1 PacBio HiFi (.fq) 21.75 Gbp 10.15x 76.7 GiB
PacBio HiFi (.bam) 91.15 Gbp 42.56x 321.4 GiB
Arima 123.97 Gbp 57.88x 67.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.14 Gbp.
Last upload on 13 December 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 20 December 2023
mGarKee1.HiC.hap1.decontam.20231220.fasta.gz (586.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 124.89 Mbp 1 220.40 Mbp
20 4 97.87 Mbp 3 216.60 Mbp
30 7 90.12 Mbp 4 213.44 Mbp
40 9 85.70 Mbp 5 177.64 Mbp
50 12 58.80 Mbp 6 171.19 Mbp
60 17 47.86 Mbp 7 142.41 Mbp
70 22 37.08 Mbp 9 106.78 Mbp
80 28 28.23 Mbp 11 95.64 Mbp
90 38 15.36 Mbp 14 74.59 Mbp
100 370 16.62 Kbp 314 16.62 Kbp
1.000x 370 2.20 Gbp 314 2.20 Gbp
NG based on genome size 2.14 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 20 December 2023
mGarKee1.HiC.hap2.decontam.20231220.fasta.gz (554.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 118.12 Mbp 1 221.32 Mbp
20 4 113.93 Mbp 2 219.87 Mbp
30 6 94.94 Mbp 3 216.49 Mbp
40 8 88.79 Mbp 4 213.46 Mbp
50 11 85.10 Mbp 5 179.07 Mbp
60 14 58.42 Mbp 7 142.42 Mbp
70 18 48.53 Mbp 8 114.89 Mbp
80 22 40.91 Mbp 10 95.24 Mbp
90 29 24.58 Mbp 12 76.71 Mbp
100 197 29.17 Kbp 152 29.17 Kbp
1.000x 197 2.06 Gbp 152 2.06 Gbp
NG based on genome size 2.14 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.