Fringilla coelebs

chaffinch

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bFriCoe
  name: Fringilla coelebs
  taxon_id: 37598
  common_name: chaffinch
  order:
    name: Passeriformes
  family:
    name: Fringillidae
  individuals:
    - short_name: bFriCoe1
      biosample_id: SAMEA9359753
      sex: male
  genome_size:
  genome_size_method:
  project: [ vgp ]
public domain, Bernard Spragg (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bFriCoe1 45.74 Gbp 37.82x 119.5 GiB
Arima bFriCoe1 115.17 Gbp 95.25x 54.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.21 Gbp.
Last upload on 22 April 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bFriCoe1 PacBio HiFi (.bam) 45.74 Gbp 37.82x 119.5 GiB
Arima 115.17 Gbp 95.25x 54.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.21 Gbp.
Last upload on 22 April 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 September 2023
bFriCoe1.pri.cur.20230926.fasta.gz (321.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 9.77 Mbp 1 153.47 Mbp
20 25 7.44 Mbp 2 117.29 Mbp
30 43 5.89 Mbp 3 114.83 Mbp
40 66 4.79 Mbp 5 73.43 Mbp
50 94 3.73 Mbp 6 73.25 Mbp
60 131 2.88 Mbp 9 37.13 Mbp
70 180 2.15 Mbp 13 22.46 Mbp
80 249 1.46 Mbp 19 15.57 Mbp
90 360 0.77 Mbp 34 3.43 Mbp
100 1033 1.00 Kbp 460 1.00 Kbp
1.000x 1033 1.21 Gbp 460 1.21 Gbp
NG based on genome size 1.21 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 September 2023
bFriCoe1.alt.cur.20230926.fasta.gz (316.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 4.41 Mbp 20 4.41 Mbp
20 52 3.23 Mbp 52 3.23 Mbp
30 93 2.59 Mbp 93 2.59 Mbp
40 143 2.10 Mbp 143 2.10 Mbp
50 207 1.66 Mbp 207 1.66 Mbp
60 285 1.34 Mbp 285 1.34 Mbp
70 387 1.02 Mbp 387 1.02 Mbp
80 527 0.69 Mbp 527 0.69 Mbp
90 769 330.34 Kbp 769 330.34 Kbp
100 2178 6.14 Kbp 2178 6.14 Kbp
1.000x 2178 1.17 Gbp 2178 1.17 Gbp
NG based on genome size 1.21 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 May 2023
bFriCoe1.MT.20230505.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.