Falco naumanni

lesser kestrel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Maternal Assembly Paternal Assembly
GenBank bFalNau1: GCA_017639645.1 bFalNau1: GCA_017639655.1
ENA bFalNau1: GCA_017639645.1 bFalNau1: GCA_017639655.1
UCSC Genome Browser bFalNau1: GCA_017639645.1 bFalNau1: GCA_017639655.1

metadata.yaml (view) (edit on github)
species:
  common_name: lesser kestrel
  family:
    name: Falconidae
  genome_size: 1350000000
  genome_size_method: kmers
  individuals:
  - short_name: bFalNau1
  - short_name: bFalNau2
  - short_name: bFalNau3
  name: Falco naumanni
  order:
    name: Falconiformes
  short_name: bFalNau
  taxon_id: 148594
  project: [ vgp ]
Copyright Michele Mendi, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bFalNau1 141.85 Gbp 105.07x 254.1 GiB
10x bFalNau1 89.04 Gbp 65.96x 44.8 GiB
Bionano bFalNau1 N/A 335.35x 857.0 MiB
Arima bFalNau1 72.12 Gbp 53.42x 40.4 GiB
Illumina bFalNau2 157.96 Gbp 117.00x 76.2 GiB
bFalNau3 192.80 Gbp 142.81x 92.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 23 January 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bFalNau1 PacBio CLR 141.85 Gbp 105.07x 254.1 GiB
10x 89.04 Gbp 65.96x 44.8 GiB
Bionano N/A 335.35x 857.0 MiB
Arima 72.12 Gbp 53.42x 40.4 GiB
bFalNau2 Illumina 157.96 Gbp 117.00x 76.2 GiB
bFalNau3 Illumina 192.80 Gbp 142.81x 92.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 23 January 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 18 August 2020
bFalNau1.pri.cur.20200818.fasta.gz (354.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 54.07 Mbp 1 123.27 Mbp
20 6 23.92 Mbp 2 121.31 Mbp
30 12 20.49 Mbp 3 113.49 Mbp
40 19 16.20 Mbp 4 92.80 Mbp
50 29 12.38 Mbp 6 86.60 Mbp
60 41 9.70 Mbp 7 72.77 Mbp
70 59 5.90 Mbp 9 53.80 Mbp
80 90 3.09 Mbp 13 30.44 Mbp
90 0 221 22.28 Kbp
100 0 0
0.897x 588 1.21 Gbp 290 1.22 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 18 August 2020
bFalNau1.alt.cur.20200818.fasta.gz (11.2 KiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 0 0
20 0 0
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.000x 2 36.35 Kbp 2 36.35 Kbp
NG based on genome size 1.35 Gbp.
Individual 1 Merged Trio Assembly
Version assembly_curated from 14 July 2020
bFalNau1.pat.W.cur.20200714.fasta.gz (354.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 54.07 Mbp 1 123.27 Mbp
20 6 23.92 Mbp 2 121.31 Mbp
30 12 20.49 Mbp 3 113.49 Mbp
40 19 16.20 Mbp 4 92.80 Mbp
50 29 12.38 Mbp 6 86.60 Mbp
60 41 9.70 Mbp 7 72.77 Mbp
70 59 5.90 Mbp 9 53.80 Mbp
80 90 3.09 Mbp 13 30.44 Mbp
90 0 221 22.28 Kbp
100 0 0
0.897x 588 1.21 Gbp 290 1.22 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Maternal Assembly
Version assembly_curated from 14 July 2020
bFalNau1.mat.decon.20200714.fasta.gz (334.9 MiB)

Quality: 95.1 errors/Mb (QV=40.22)

Contigs Scaffolds
NG LG Len LG Len
10 3 31.76 Mbp 1 112.42 Mbp
20 7 26.57 Mbp 2 87.23 Mbp
30 14 20.73 Mbp 4 73.02 Mbp
40 21 16.51 Mbp 6 65.16 Mbp
50 31 11.50 Mbp 8 55.90 Mbp
60 46 7.95 Mbp 11 35.70 Mbp
70 67 5.21 Mbp 15 24.35 Mbp
80 111 1.27 Mbp 26 6.08 Mbp
90 0 0
100 0 0
0.848x 809 1.14 Gbp 551 1.16 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Paternal Assembly
Version assembly_curated from 14 July 2020
bFalNau1.pat.decon.20200714.fasta.gz (347.9 MiB)

Quality: 71.6 errors/Mb (QV=41.45)

Contigs Scaffolds
NG LG Len LG Len
10 2 54.07 Mbp 1 121.25 Mbp
20 6 23.92 Mbp 2 112.11 Mbp
30 12 20.49 Mbp 3 87.93 Mbp
40 19 16.20 Mbp 5 74.68 Mbp
50 29 12.46 Mbp 7 68.61 Mbp
60 41 9.70 Mbp 9 52.54 Mbp
70 58 6.22 Mbp 12 33.98 Mbp
80 90 2.70 Mbp 17 19.50 Mbp
90 0 0
100 0 0
0.880x 723 1.19 Gbp 491 1.20 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
bFalNau1.MT.20191204.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.