Erithacus rubecula

European robin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bEriRub2: GCA_903797595.2 bEriRub2: GCA_903797565.2
ENA bEriRub2: GCA_903797595.2 bEriRub2: GCA_903797565.2
UCSC Genome Browser bEriRub2: GCA_903797595.2 bEriRub2: GCA_903797565.2

metadata.yaml (view) (edit on github)
species:
  short_name: bEriRub
  name: Erithacus rubecula
  taxon_id: 37610
  common_name: European robin
  order:
    name: Passeriformes
  family:
    name: Muscicapidae
  individuals:
    - short_name: bEriRub2
      biosample_id: SAMEA4760689
      sex: female
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.0, Juan Emilio (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bEriRub2 74.48 Gbp 68.53x 130.1 GiB
10x bEriRub2 126.32 Gbp 116.23x 78.1 GiB
Dovetail Genomics bEriRub2 137.17 Gbp 126.22x 85.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 18 December 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bEriRub2 PacBio CLR 74.48 Gbp 68.53x 130.1 GiB
10x 126.32 Gbp 116.23x 78.1 GiB
Dovetail Genomics 137.17 Gbp 126.22x 85.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 18 December 2019.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 3 June 2020
bEriRub2.pri.cur.20200603.fasta.gz (313.1 MiB)

Quality: 74.7 errors/Mb (QV=41.27)

Contigs Scaffolds
NG LG Len LG Len
10 5 16.37 Mbp 0 112.10 Mbp
20 12 12.24 Mbp 1 109.05 Mbp
30 22 10.07 Mbp 3 68.60 Mbp
40 34 7.47 Mbp 4 68.52 Mbp
50 51 5.59 Mbp 6 46.56 Mbp
60 75 3.52 Mbp 9 31.99 Mbp
70 113 2.18 Mbp 13 20.40 Mbp
80 189 0.92 Mbp 20 13.42 Mbp
90 401 284.09 Kbp 35 3.15 Mbp
100 2108 1.64 Kbp 1119 9.77 Kbp
1.000x 2109 1.09 Gbp 1120 1.09 Gbp
NG based on genome size 1.09 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 3 June 2020
bEriRub2.alt.cur.20200603.fasta.gz (264.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 2.06 Mbp 32 2.06 Mbp
20 88 1.41 Mbp 88 1.41 Mbp
30 165 1.03 Mbp 165 1.03 Mbp
40 269 0.77 Mbp 269 0.77 Mbp
50 404 0.60 Mbp 404 0.60 Mbp
60 585 425.88 Kbp 584 429.50 Kbp
70 842 302.47 Kbp 840 303.49 Kbp
80 1232 185.31 Kbp 1226 186.41 Kbp
90 1887 104.32 Kbp 1878 104.69 Kbp
100 3685 222 bp 3667 222 bp
1.000x 3686 0.91 Gbp 3668 0.91 Gbp
NG based on genome size 1.09 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.