Eptesicus nilssonii

northern bat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mEptNil1: GCA_951640355.1 mEptNil1: GCA_951640545.1
ENA mEptNil1: GCA_951640355.1 mEptNil1: GCA_951640545.1
UCSC Genome Browser mEptNil1: GCA_951640355.1 mEptNil1: GCA_951640545.1

metadata.yaml (view) (edit on github)
species:
  short_name: mEptNil
  name: Eptesicus nilssonii
  taxon_id: 59451
  common_name: northern bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mEptNil1
      biosample_id: SAMEA14098186
      sex: female
  genome_size: 2383875000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mEptNil1 67.43 Gbp 28.29x 100.8 GiB
Arima mEptNil1 252.25 Gbp 105.81x 75.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.38 Gbp.
Last upload on 19 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mEptNil1 PacBio HiFi (.bam) 67.43 Gbp 28.29x 100.8 GiB
Arima 252.25 Gbp 105.81x 75.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.38 Gbp.
Last upload on 19 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 August 2023
mEptNil1.pri.cur.20230816.fasta.gz (588.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 5.92 Mbp 2 118.31 Mbp
20 79 4.43 Mbp 4 112.64 Mbp
30 143 3.18 Mbp 7 108.21 Mbp
40 226 2.62 Mbp 9 103.32 Mbp
50 328 2.06 Mbp 11 95.30 Mbp
60 460 1.57 Mbp 14 85.40 Mbp
70 642 1.08 Mbp 17 62.83 Mbp
80 929 0.58 Mbp 21 52.18 Mbp
90 0 0
100 0 0
0.866x 1630 2.06 Gbp 207 2.06 Gbp
NG based on genome size 2.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 August 2023
mEptNil1.alt.cur.20230816.fasta.gz (546.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 97 1.88 Mbp 97 1.88 Mbp
20 247 1.36 Mbp 247 1.36 Mbp
30 445 1.07 Mbp 445 1.07 Mbp
40 695 0.84 Mbp 695 0.84 Mbp
50 1018 0.65 Mbp 1018 0.65 Mbp
60 1459 456.90 Kbp 1459 456.92 Kbp
70 2139 258.36 Kbp 2138 258.74 Kbp
80 0 0
90 0 0
100 0 0
0.797x 4899 1.90 Gbp 4896 1.90 Gbp
NG based on genome size 2.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 May 2023
mEptNil1.MT.20230507.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.