Eptesicus chiriquinus

Chiriquinan serotine

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mEptChi
  name: Eptesicus chiriquinus
  taxon_id: 409022
  common_name: Chiriquinan serotine
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
  - mEptChi1
  genome_size: 2383875000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mEptChi1 35.76 Gbp 15.00x 75.0 GiB
PacBio HiFi (.bam) mEptChi1 88.90 Gbp 37.29x 316.4 GiB
Arima mEptChi1 138.07 Gbp 57.92x 56.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.38 Gbp.
Last upload on 13 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mEptChi1 PacBio HiFi (.fq) 35.76 Gbp 15.00x 75.0 GiB
PacBio HiFi (.bam) 88.90 Gbp 37.29x 316.4 GiB
Arima 138.07 Gbp 57.92x 56.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.38 Gbp.
Last upload on 13 December 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 20 December 2023
mEptChi1.HiC.hap1.decontam.20231220.fasta.gz (566.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 92.91 Mbp 2 118.91 Mbp
20 5 79.96 Mbp 4 116.01 Mbp
30 8 74.64 Mbp 6 111.07 Mbp
40 11 57.25 Mbp 8 107.04 Mbp
50 15 49.08 Mbp 10 98.50 Mbp
60 21 35.54 Mbp 12 88.36 Mbp
70 28 25.12 Mbp 15 82.05 Mbp
80 40 11.43 Mbp 18 64.54 Mbp
90 75 3.35 Mbp 22 54.90 Mbp
100 433 9.46 Kbp 146 9.46 Kbp
1.000x 433 2.16 Gbp 146 2.16 Gbp
NG based on genome size 2.38 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 20 December 2023
mEptChi1.HiC.hap2.decontam.20231220.fasta.gz (524.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 102.15 Mbp 2 118.44 Mbp
20 5 82.15 Mbp 4 115.26 Mbp
30 7 71.21 Mbp 6 111.04 Mbp
40 10 62.24 Mbp 7 109.51 Mbp
50 14 51.36 Mbp 9 102.87 Mbp
60 18 45.55 Mbp 11 94.79 Mbp
70 23 35.66 Mbp 14 79.45 Mbp
80 31 19.20 Mbp 16 65.36 Mbp
90 59 3.43 Mbp 20 54.80 Mbp
100 392 17.17 Kbp 126 17.17 Kbp
1.000x 392 2.00 Gbp 126 2.00 Gbp
NG based on genome size 2.38 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.