Electrophorus electricus

electric eel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fEleEle1: GCA_013358815.1 fEleEle1: GCA_013347915.1
ENA fEleEle1: GCA_013358815.1 fEleEle1: GCA_013347915.1
UCSC Genome Browser fEleEle1: GCA_013358815.1 fEleEle1: GCA_013347915.1

metadata.yaml (view) (edit on github)
species:
  common_name: electric eel 
  family:
    name: Gymnotidae
  genome_size: 969258935
  genome_size_method: meryl
  individuals:
  - short_name: fEleEle1
  name: Electrophorus electricus
  order:
    name: Gymnotiformes
  short_name: fEleEle
  taxon_id: 8005
  project: [ vgp ]
CC BY 2.0 Ryan Ready (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fEleEle1 51.38 Gbp 53.01x 87.2 GiB
10x fEleEle1 71.10 Gbp 73.35x 33.0 GiB
Bionano fEleEle1 N/A 198.15x 207.2 MiB
Arima fEleEle1 164.41 Gbp 169.63x 86.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.97 Gbp.
Last upload on 31 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fEleEle1 PacBio CLR 51.38 Gbp 53.01x 87.2 GiB
10x 71.10 Gbp 73.35x 33.0 GiB
Bionano N/A 198.15x 207.2 MiB
Arima 164.41 Gbp 169.63x 86.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.97 Gbp.
Last upload on 31 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 17 March 2020
fEleEle1.pri.cur.20200317.fasta.gz (162.4 MiB)

Quality: 57.5 errors/Mb (QV=42.40)

Contigs Scaffolds
NG LG Len LG Len
10 5 13.16 Mbp 2 32.54 Mbp
20 13 10.30 Mbp 5 30.14 Mbp
30 25 6.96 Mbp 9 25.66 Mbp
40 42 4.50 Mbp 13 22.70 Mbp
50 76 1.97 Mbp 18 16.41 Mbp
60 0 25 10.95 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.597x 316 0.58 Gbp 89 0.59 Gbp
NG based on genome size 0.97 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 17 March 2020
fEleEle1.alt.cur.20200317.fasta.gz (123.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 193 357.47 Kbp 193 357.47 Kbp
20 531 236.60 Kbp 531 236.60 Kbp
30 1032 159.83 Kbp 1032 159.83 Kbp
40 1865 83.12 Kbp 1865 83.12 Kbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.442x 2630 428.14 Mbp 2630 428.14 Mbp
NG based on genome size 0.97 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fEleEle1.MT.20191002.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.