Echiichthys vipera

lesser weever

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fEchVip
  name: Echiichthys vipera
  taxon_id: 94984
  common_name: lesser weever
  order:
    name: Perciformes
  family:
    name: Trachinidae
  individuals:
    - short_name: fEchVip8
      biosample_id: SAMEA112765695
      sex:
  genome_size: 1036680000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fEchVip8 25.53 Gbp 24.63x 15.1 GiB
Arima fEchVip8 126.15 Gbp 121.69x 38.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.04 Gbp.
Last upload on 13 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fEchVip8 PacBio HiFi (.bam) 25.53 Gbp 24.63x 15.1 GiB
Arima 126.15 Gbp 121.69x 38.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.04 Gbp.
Last upload on 13 November 2023.
Assemblies
Individual 8 Primary Assembly
Version assembly_curated from 25 November 2023
fEchVip8.pri.cur.20231125.fasta.gz (223.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 5.45 Mbp 3 38.68 Mbp
20 38 4.14 Mbp 6 35.69 Mbp
30 65 3.38 Mbp 9 34.45 Mbp
40 101 2.53 Mbp 12 32.10 Mbp
50 149 1.83 Mbp 15 30.51 Mbp
60 216 1.30 Mbp 18 28.92 Mbp
70 330 0.59 Mbp 22 26.17 Mbp
80 0 0
90 0 0
100 0 0
0.772x 739 0.80 Gbp 133 0.80 Gbp
NG based on genome size 1.04 Gbp.
Individual 8 Alternate Assembly
Version assembly_curated from 25 November 2023
fEchVip8.alt.cur.20231125.fasta.gz (208.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 51 1.62 Mbp 51 1.62 Mbp
20 129 1.10 Mbp 129 1.10 Mbp
30 242 0.79 Mbp 242 0.79 Mbp
40 403 0.53 Mbp 403 0.53 Mbp
50 651 319.47 Kbp 651 319.47 Kbp
60 1114 149.97 Kbp 1114 149.97 Kbp
70 2613 25.95 Kbp 2611 25.95 Kbp
80 0 0
90 0 0
100 0 0
0.712x 3242 0.74 Gbp 3240 0.74 Gbp
NG based on genome size 1.04 Gbp.
Individual 8 Mitochondrial Assembly
Version assembly_MT_cambridge from 13 November 2023
fEchVip8.MT.20231113.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.