Echeneis naucrates

live sharksucker

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fEcheNa1: GCA_900963305.2 fEcheNa1: GCA_900963505.1
ENA fEcheNa1: GCA_900963305.2 fEcheNa1: GCA_900963505.1
UCSC Genome Browser fEcheNa1: GCA_900963305.2 fEcheNa1: GCA_900963505.1

metadata.yaml (view) (edit on github)
species:
  short_name: fEcheNa
  name: Echeneis naucrates
  taxon_id: 173247
  common_name: live sharksucker
  order:
    name: Carangiformes
  family:
    name: Echeneidae
  individuals:
    - short_name: fEcheNa1
      biosample_id: SAMEA4966390
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY 2.0 Richard ling (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fEcheNa1 45.28 Gbp 83.20x 79.0 GiB
10x fEcheNa1 125.19 Gbp 230.05x 79.8 GiB
Bionano fEcheNa1 N/A 1314.98x 0.9 GiB
Dovetail Genomics fEcheNa1 137.31 Gbp 252.31x 84.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.54 Gbp.
Last upload on 5 February 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fEcheNa1 PacBio CLR 45.28 Gbp 83.20x 79.0 GiB
10x 125.19 Gbp 230.05x 79.8 GiB
Bionano N/A 1314.98x 0.9 GiB
Dovetail Genomics 137.31 Gbp 252.31x 84.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.54 Gbp.
Last upload on 5 February 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.pri.cur.20190401.fasta.gz (147.5 MiB)

Quality: 26.1 errors/Mb (QV=45.83)

Contigs Scaffolds
NG LG Len LG Len
10 2 18.72 Mbp 1 26.82 Mbp
20 5 17.47 Mbp 4 25.44 Mbp
30 8 16.72 Mbp 6 24.88 Mbp
40 12 14.27 Mbp 8 24.57 Mbp
50 16 12.37 Mbp 10 23.29 Mbp
60 21 9.90 Mbp 13 22.31 Mbp
70 27 6.88 Mbp 15 20.80 Mbp
80 36 4.25 Mbp 18 20.38 Mbp
90 58 1.72 Mbp 20 19.09 Mbp
100 176 72 bp 36 19.22 Kbp
1.000x 177 0.54 Gbp 37 0.54 Gbp
NG based on genome size 0.54 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.alt.cur.20190401.fasta.gz (155.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 2.79 Mbp 11 3.07 Mbp
20 36 1.97 Mbp 32 2.05 Mbp
30 66 1.58 Mbp 61 1.65 Mbp
40 106 1.17 Mbp 99 1.24 Mbp
50 157 0.89 Mbp 148 0.92 Mbp
60 229 0.62 Mbp 218 0.64 Mbp
70 333 422.82 Kbp 320 426.59 Kbp
80 488 268.09 Kbp 475 268.09 Kbp
90 750 156.29 Kbp 736 156.55 Kbp
100 1423 313 bp 1404 313 bp
1.000x 1424 0.53 Gbp 1405 0.53 Gbp
NG based on genome size 0.54 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fEcheNa1.MT.20191002.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.