Dromiciops gliroides

monito del monte

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mDroGli1: GCA_019393635.1 mDroGli1: GCA_019395325.1
ENA mDroGli1: GCA_019393635.1 mDroGli1: GCA_019395325.1
UCSC Genome Browser mDroGli1: GCA_019393635.1 mDroGli1: GCA_019395325.1

metadata.yaml (view) (edit on github)
species:
  short_name: mDroGli
  name: Dromiciops gliroides
  taxon_id: 33562
  common_name: monito del monte 
  order:
    name: Microbiotheria
  family:
    name: Microbiotheriidae
  individuals:
    - short_name: mDroGli1
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mDroGli1 208.26 Gbp 63.05x 366.0 GiB
10x mDroGli1 237.85 Gbp 72.01x 116.7 GiB
Bionano mDroGli1 N/A 159.51x 1.0 GiB
Arima mDroGli1 243.03 Gbp 73.58x 117.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.30 Gbp.
Last upload on 28 September 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mDroGli1 PacBio CLR 208.26 Gbp 63.05x 366.0 GiB
10x 237.85 Gbp 72.01x 116.7 GiB
Bionano N/A 159.51x 1.0 GiB
Arima 243.03 Gbp 73.58x 117.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.30 Gbp.
Last upload on 28 September 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 7 April 2021
mDroGli1.pri.cur.20210407.fasta.gz (0.9 GiB)

Quality: 260.1 errors/Mb (QV=35.85)

Contigs Scaffolds
NG LG Len LG Len
10 3 93.52 Mbp 0 0.76 Gbp
20 6 66.17 Mbp 0 0.76 Gbp
30 12 54.28 Mbp 1 0.70 Gbp
40 18 47.23 Mbp 1 0.70 Gbp
50 26 38.23 Mbp 2 0.67 Gbp
60 35 30.77 Mbp 2 0.67 Gbp
70 47 24.95 Mbp 3 497.00 Mbp
80 62 17.30 Mbp 4 303.35 Mbp
90 87 9.89 Mbp 5 280.58 Mbp
100 276 162 bp 16 6.36 Kbp
1.000x 277 3.30 Gbp 17 3.30 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 7 April 2021
mDroGli1.alt.cur.20210407.fasta.gz (811.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 168 1.29 Mbp 168 1.29 Mbp
20 425 0.97 Mbp 425 0.97 Mbp
30 749 0.78 Mbp 749 0.78 Mbp
40 1156 0.62 Mbp 1156 0.62 Mbp
50 1665 490.19 Kbp 1665 490.19 Kbp
60 2315 383.25 Kbp 2315 383.25 Kbp
70 3175 279.72 Kbp 3175 279.86 Kbp
80 4397 190.88 Kbp 4395 190.99 Kbp
90 6251 120.53 Kbp 6246 120.66 Kbp
100 9958 315 bp 9925 2.10 Kbp
1.000x 9959 2.82 Gbp 9926 2.82 Gbp
NG based on genome size 3.30 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 24 May 2021
mDroGli1.MT.20210524.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.