Dermochelys coriacea

leatherback sea turtle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank rDerCor1: GCA_009764565.4 rDerCor1: GCA_009762595.2
ENA rDerCor1: GCA_009764565.4 rDerCor1: GCA_009762595.2
UCSC Genome Browser rDerCor1: GCA_009764565.4 rDerCor1: GCA_009762595.2

metadata.yaml (view) (edit on github)
species:
  short_name: rDerCor
  name: Dermochelys coriacea
  taxon_id: 27794
  common_name: leatherback sea turtle
  order:
    name: Testudines
  family:
    name: Dermochelyidae
  individuals:
    - short_name: rDerCor1
  genome_size: 2500000000
  genome_size_method:
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR rDerCor1 159.79 Gbp 63.91x 275.9 GiB
10x rDerCor1 288.93 Gbp 115.57x 139.5 GiB
Bionano rDerCor1 N/A 675.90x 2.9 GiB
Arima rDerCor1 178.70 Gbp 71.48x 93.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.50 Gbp.
Last upload on 22 July 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rDerCor1 PacBio CLR 159.79 Gbp 63.91x 275.9 GiB
10x 288.93 Gbp 115.57x 139.5 GiB
Bionano N/A 675.90x 2.9 GiB
Arima 178.70 Gbp 71.48x 93.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.50 Gbp.
Last upload on 22 July 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 May 2021
rDerCor1.pri.cur.20210524.fasta.gz (631.2 MiB)

Quality: 126.0 errors/Mb (QV=39.00)

Contigs Scaffolds
NG LG Len LG Len
10 10 18.72 Mbp 0 354.45 Mbp
20 26 13.47 Mbp 1 272.70 Mbp
30 48 10.22 Mbp 2 212.17 Mbp
40 77 7.34 Mbp 4 137.57 Mbp
50 114 6.01 Mbp 5 131.13 Mbp
60 164 4.15 Mbp 8 105.21 Mbp
70 238 2.83 Mbp 10 80.02 Mbp
80 362 1.36 Mbp 18 20.02 Mbp
90 0 0
100 0 0
0.864x 708 2.16 Gbp 40 2.16 Gbp
NG based on genome size 2.50 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 May 2021
rDerCor1.alt.cur.20210524.fasta.gz (422.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 355 0.51 Mbp 355 0.51 Mbp
20 956 341.31 Kbp 956 341.31 Kbp
30 1840 237.69 Kbp 1840 237.69 Kbp
40 3137 156.02 Kbp 3137 156.02 Kbp
50 5298 84.38 Kbp 5298 84.42 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.578x 9006 1.44 Gbp 8999 1.44 Gbp
NG based on genome size 2.50 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
rDerCor1.MT.20190820.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.