Delphinus delphis

saddleback dolphin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mDelDel1: GCA_949987515.1 mDelDel1: GCA_949987525.1
ENA mDelDel1: GCA_949987515.1 mDelDel1: GCA_949987525.1
UCSC Genome Browser mDelDel1: GCA_949987515.1 mDelDel1: GCA_949987525.1

metadata.yaml (view) (edit on github)
species:
  short_name: mDelDel
  name: Delphinus delphis
  taxon_id: 9728
  common_name: saddleback dolphin
  order:
    name: Cetacea
  family:
    name: Delphinidae
  individuals:
    - short_name: mDelDel1
      biosample_id: SAMEA111380534
      sex: male
  genome_size: 3080700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mDelDel1 80.60 Gbp 26.16x 273.7 GiB
Arima mDelDel1 458.84 Gbp 148.94x 136.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 11 March 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mDelDel1 PacBio HiFi (.bam) 80.60 Gbp 26.16x 273.7 GiB
Arima 458.84 Gbp 148.94x 136.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 11 March 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 21 April 2023
mDelDel1.pri.cur.20230421.fasta.gz (717.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 7.91 Mbp 2 178.37 Mbp
20 78 5.87 Mbp 4 144.52 Mbp
30 136 4.71 Mbp 6 126.48 Mbp
40 208 3.90 Mbp 9 110.53 Mbp
50 298 3.02 Mbp 12 102.45 Mbp
60 417 2.23 Mbp 15 88.85 Mbp
70 584 1.53 Mbp 19 78.82 Mbp
80 863 0.77 Mbp 53 1.91 Mbp
90 0 0
100 0 0
0.865x 1599 2.66 Gbp 631 2.66 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 April 2023
mDelDel1.alt.cur.20230421.fasta.gz (670.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 123 1.86 Mbp 123 1.86 Mbp
20 316 1.37 Mbp 316 1.38 Mbp
30 573 1.05 Mbp 572 1.06 Mbp
40 905 0.81 Mbp 904 0.81 Mbp
50 1343 0.61 Mbp 1342 0.61 Mbp
60 1939 428.82 Kbp 1938 428.82 Kbp
70 2898 229.76 Kbp 2897 229.76 Kbp
80 0 0
90 0 0
100 0 0
0.792x 7427 2.44 Gbp 7426 2.44 Gbp
NG based on genome size 3.08 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.