Cuculus canorus

common cuckoo

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bCucCan1: GCA_017976375.1 bCucCan1: GCA_017976305.1
ENA bCucCan1: GCA_017976375.1 bCucCan1: GCA_017976305.1
UCSC Genome Browser bCucCan1: GCA_017976375.1 bCucCan1: GCA_017976305.1

metadata.yaml (view) (edit on github)
species:
  common_name: common cuckoo
  family:
    name: Cuculidae
  genome_size: 1400000000
  genome_size_method: null
  individuals:
  - short_name: bCucCan1
  name: Cuculus canorus
  order:
    name: Cuculiformes
  short_name: bCucCan
  taxon_id: 55661
  project: [ vgp ]
CC BY 2.0 Ron Knight (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bCucCan1 89.89 Gbp 64.21x 155.7 GiB
10x bCucCan1 127.74 Gbp 91.25x 60.9 GiB
Bionano bCucCan1 N/A 204.62x 580.8 MiB
Arima bCucCan2 117.50 Gbp 83.93x 72.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 14 July 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCucCan1 PacBio CLR 89.89 Gbp 64.21x 155.7 GiB
10x 127.74 Gbp 91.25x 60.9 GiB
Bionano N/A 204.62x 580.8 MiB
bCucCan2 Arima 117.50 Gbp 83.93x 72.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 14 July 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 30 March 2021
bCucCan1.pri.cur.20210330.fasta.gz (342.0 MiB)

Quality: 47.9 errors/Mb (QV=43.20)

Contigs Scaffolds
NG LG Len LG Len
10 1 63.34 Mbp 0 209.32 Mbp
20 5 33.56 Mbp 1 162.17 Mbp
30 9 29.13 Mbp 2 122.85 Mbp
40 15 21.77 Mbp 3 79.99 Mbp
50 22 15.63 Mbp 5 69.23 Mbp
60 34 11.15 Mbp 9 28.16 Mbp
70 50 6.09 Mbp 14 21.77 Mbp
80 89 1.62 Mbp 25 8.01 Mbp
90 0 0
100 0 0
0.839x 446 1.18 Gbp 150 1.18 Gbp
NG based on genome size 1.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 30 March 2021
bCucCan1.alt.cur.20210330.fasta.gz (309.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 9.03 Mbp 11 9.03 Mbp
20 31 6.16 Mbp 31 6.16 Mbp
30 57 4.62 Mbp 57 4.62 Mbp
40 92 3.39 Mbp 92 3.39 Mbp
50 141 2.36 Mbp 141 2.36 Mbp
60 215 1.52 Mbp 215 1.52 Mbp
70 361 0.53 Mbp 361 0.53 Mbp
80 0 0
90 0 0
100 0 0
0.760x 1012 1.06 Gbp 1004 1.06 Gbp
NG based on genome size 1.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
bCucCan1.MT.20191216.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.