Cottoperca gobio

channel bull blenny

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fCotGob3: GCA_900634415.1 fCotGob3: GCA_900634435.1
ENA fCotGob3: GCA_900634415.1 fCotGob3: GCA_900634435.1
UCSC Genome Browser fCotGob3: GCA_900634415.1 fCotGob3: GCA_900634435.1

metadata.yaml (view) (edit on github)
species:
  short_name: fCotGob
  name: Cottoperca gobio
  taxon_id: 56716
  common_name: channel bull blenny
  order:
    name: Perciformes
  family:
    name: Bovichtidae
  individuals:
    - short_name: fCotGob2
    - short_name: fCotGob3
  genome_size: 700000000
  genome_size_method:
  project: [ vgp ]
Copyright Chris Cheng, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fCotGob3 48.60 Gbp 69.44x 86.7 GiB
10x fCotGob3 98.10 Gbp 140.15x 65.7 GiB
Bionano fCotGob3 N/A 3785.21x 3.4 GiB
Arima fCotGob2 89.97 Gbp 128.52x 43.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.70 Gbp.
Last upload on 12 April 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCotGob2 Arima 89.97 Gbp 128.52x 43.7 GiB
fCotGob3 PacBio CLR 48.60 Gbp 69.44x 86.7 GiB
10x 98.10 Gbp 140.15x 65.7 GiB
Bionano N/A 3785.21x 3.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.70 Gbp.
Last upload on 12 April 2018.
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 26 October 2018
fCotGob3.pri.cur.20181026.fasta.gz (160.1 MiB)

Quality: 438.6 errors/Mb (QV=33.58)

Contigs Scaffolds
NG LG Len LG Len
10 3 18.77 Mbp 2 30.03 Mbp
20 8 12.18 Mbp 4 27.74 Mbp
30 14 8.97 Mbp 7 27.06 Mbp
40 24 6.45 Mbp 9 25.70 Mbp
50 36 5.03 Mbp 12 24.10 Mbp
60 55 2.77 Mbp 15 22.90 Mbp
70 90 1.38 Mbp 18 22.19 Mbp
80 188 357.58 Kbp 22 14.93 Mbp
90 0 0
100 0 0
0.867x 767 0.61 Gbp 322 0.61 Gbp
NG based on genome size 0.70 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 26 October 2018
fCotGob3.alt.cur.20181026.fasta.gz (193.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 102 477.83 Kbp 102 477.83 Kbp
20 294 303.24 Kbp 294 303.24 Kbp
30 568 214.99 Kbp 568 215.75 Kbp
40 959 147.54 Kbp 958 147.95 Kbp
50 1541 100.17 Kbp 1539 100.26 Kbp
60 2413 65.39 Kbp 2411 65.39 Kbp
70 3709 45.53 Kbp 3706 45.53 Kbp
80 5563 31.56 Kbp 5560 31.56 Kbp
90 8335 19.60 Kbp 8332 19.60 Kbp
100 0 0
0.959x 11565 0.67 Gbp 11555 0.67 Gbp
NG based on genome size 0.70 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.