Corvus moneduloides

New Caledonian crow

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bCorMon1: GCA_009650955.1 bCorMon1: GCA_009651025.1
ENA bCorMon1: GCA_009650955.1 bCorMon1: GCA_009651025.1
UCSC Genome Browser bCorMon1: GCA_009650955.1 bCorMon1: GCA_009651025.1

metadata.yaml (view) (edit on github)
species:
  common_name: New Caledonian crow
  family:
    name: Corvidae
  genome_size: 1250000000
  genome_size_method: null
  individuals:
  - short_name: bCorMon1
  name: Corvus moneduloides
  order:
    name: Passeriformes
  short_name: bCorMon
  taxon_id: 1196302
  project: [ vgp ]
CC BY-NC-SA 2.0 Corvus moneduloides (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bCorMon1 77.40 Gbp 61.92x 132.8 GiB
10x bCorMon1 129.33 Gbp 103.46x 60.2 GiB
Bionano bCorMon1 N/A 182.81x 417.3 MiB
Arima bCorMon1 102.95 Gbp 82.36x 64.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.25 Gbp.
Last upload on 27 July 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCorMon1 PacBio CLR 77.40 Gbp 61.92x 132.8 GiB
10x 129.33 Gbp 103.46x 60.2 GiB
Bionano N/A 182.81x 417.3 MiB
Arima 102.95 Gbp 82.36x 64.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.25 Gbp.
Last upload on 27 July 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 September 2019
bCorMon1.pri.cur.20190926.fasta.gz (315.5 MiB)

Quality: 40.7 errors/Mb (QV=43.91)

Contigs Scaffolds
NG LG Len LG Len
10 3 28.80 Mbp 0 165.74 Mbp
20 9 17.42 Mbp 1 123.34 Mbp
30 17 15.76 Mbp 2 122.10 Mbp
40 26 12.61 Mbp 4 74.70 Mbp
50 37 9.84 Mbp 5 74.46 Mbp
60 52 6.72 Mbp 8 37.23 Mbp
70 74 4.38 Mbp 12 21.20 Mbp
80 114 1.79 Mbp 19 14.83 Mbp
90 0 0
100 0 0
0.867x 395 1.08 Gbp 106 1.11 Gbp
NG based on genome size 1.25 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 September 2019
bCorMon1.alt.cur.20190926.fasta.gz (265.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 17 5.48 Mbp 17 5.48 Mbp
20 43 4.29 Mbp 43 4.29 Mbp
30 77 3.14 Mbp 77 3.14 Mbp
40 124 2.35 Mbp 124 2.35 Mbp
50 190 1.53 Mbp 190 1.53 Mbp
60 296 0.91 Mbp 296 0.91 Mbp
70 534 212.83 Kbp 534 212.83 Kbp
80 0 0
90 0 0
100 0 0
0.724x 894 0.91 Gbp 894 0.91 Gbp
NG based on genome size 1.25 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bCorMon1.MT.20190918.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.