Conger conger

European conger

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fConCon
  name: Conger conger
  taxon_id: 82655
  common_name: European conger
  order:
    name: Anguilliformes
  family:
    name: Congridae
  individuals:
    - short_name: fConCon1
      biosample_id: SAMEA12219431
      sex:
  genome_size: 1623480000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-NC 2.0 Christophe Quintin (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fConCon1 30.69 Gbp 18.91x 74.4 GiB
Arima fConCon1 255.50 Gbp 157.38x 78.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.62 Gbp.
Last upload on 15 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fConCon1 PacBio HiFi (.bam) 30.69 Gbp 18.91x 74.4 GiB
Arima 255.50 Gbp 157.38x 78.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.62 Gbp.
Last upload on 15 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 27 September 2023
fConCon1.pri.cur.20230927.fasta.gz (310.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 17 7.52 Mbp 2 89.85 Mbp
20 44 5.30 Mbp 4 79.47 Mbp
30 81 3.76 Mbp 7 65.18 Mbp
40 134 2.61 Mbp 9 61.47 Mbp
50 213 1.62 Mbp 12 50.02 Mbp
60 374 0.65 Mbp 16 41.91 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.700x 1390 1.14 Gbp 381 1.14 Gbp
NG based on genome size 1.62 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 27 September 2023
fConCon1.alt.cur.20230927.fasta.gz (300.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 46 2.50 Mbp 46 2.50 Mbp
20 130 1.57 Mbp 130 1.57 Mbp
30 257 1.04 Mbp 257 1.04 Mbp
40 460 0.63 Mbp 460 0.63 Mbp
50 815 332.64 Kbp 815 332.64 Kbp
60 1642 114.15 Kbp 1642 114.15 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.664x 3769 1.08 Gbp 3769 1.08 Gbp
NG based on genome size 1.62 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 16 August 2023
fConCon1.MT.20230816.fasta.gz (5.8 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.