Chionomys nivalis

European snow vole

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mChiNiv1: GCA_950005125.1 mChiNiv1: GCA_950005115.1
ENA mChiNiv1: GCA_950005125.1 mChiNiv1: GCA_950005115.1
UCSC Genome Browser mChiNiv1: GCA_950005125.1 mChiNiv1: GCA_950005115.1

metadata.yaml (view) (edit on github)
species:
  short_name: mChiNiv
  name: Chionomys nivalis
  taxon_id: 269649
  common_name: European snow vole
  order:
    name: Rodentia
  family:
    name: Cricetidae
  individuals:
    - short_name: mChiNiv1
      biosample_id: SAMEA13217622
      sex: male
  genome_size: 2845980000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-NC-SA 2.0 Alexandre Roux (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mChiNiv1 64.74 Gbp 22.75x 100.9 GiB
Arima mChiNiv1 530.31 Gbp 186.34x 150.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.85 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mChiNiv1 PacBio HiFi (.bam) 64.74 Gbp 22.75x 100.9 GiB
Arima 530.31 Gbp 186.34x 150.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.85 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 21 April 2023
mChiNiv1.pri.cur.20230421.fasta.gz (684.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 61.94 Mbp 2 137.63 Mbp
20 9 53.30 Mbp 4 127.61 Mbp
30 16 42.13 Mbp 7 102.99 Mbp
40 23 33.90 Mbp 9 97.49 Mbp
50 33 24.78 Mbp 13 78.63 Mbp
60 47 17.67 Mbp 17 69.32 Mbp
70 70 9.08 Mbp 21 62.30 Mbp
80 141 1.83 Mbp 26 42.74 Mbp
90 0 0
100 0 0
0.841x 358 2.39 Gbp 161 2.39 Gbp
NG based on genome size 2.85 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 April 2023
mChiNiv1.alt.cur.20230421.fasta.gz (582.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 91 2.51 Mbp 91 2.51 Mbp
20 225 1.86 Mbp 225 1.86 Mbp
30 408 1.34 Mbp 408 1.34 Mbp
40 654 1.00 Mbp 654 1.00 Mbp
50 991 0.71 Mbp 991 0.71 Mbp
60 1504 429.15 Kbp 1504 429.15 Kbp
70 3148 40.81 Kbp 3147 40.81 Kbp
80 0 0
90 0 0
100 0 0
0.711x 4256 2.02 Gbp 4255 2.02 Gbp
NG based on genome size 2.85 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.