Chelonia mydas

Green sea turtle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank rCheMyd1: GCA_015237465.2 rCheMyd1: GCA_015220195.2
ENA rCheMyd1: GCA_015237465.2 rCheMyd1: GCA_015220195.2
UCSC Genome Browser rCheMyd1: GCA_015237465.2 rCheMyd1: GCA_015220195.2

metadata.yaml (view) (edit on github)
species:
  common_name: Green sea turtle 
  family:
    name: Cheloniidae
  individuals:
  - short_name: rCheMyd1
  name: Chelonia mydas
  order:
    name: Testudines
  short_name: rCheMyd
  taxon_id: 8469
  project: [ vgp ]
CC BY-SA 3.0 Christoph Schuetzenhofer (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR rCheMyd1 145.76 Gbp 68.29x 249.4 GiB
10x rCheMyd1 154.22 Gbp 72.26x 74.6 GiB
Bionano rCheMyd1 N/A 380.29x 1.2 GiB
Arima rCheMyd1 185.18 Gbp 86.76x 90.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.13 Gbp.
Last upload on 28 August 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rCheMyd1 PacBio CLR 145.76 Gbp 68.29x 249.4 GiB
10x 154.22 Gbp 72.26x 74.6 GiB
Bionano N/A 380.29x 1.2 GiB
Arima 185.18 Gbp 86.76x 90.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.13 Gbp.
Last upload on 28 August 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 May 2021
rCheMyd1.pri.cur.20210528.fasta.gz (622.5 MiB)

Quality: 17.1 errors/Mb (QV=47.66)

Contigs Scaffolds
NG LG Len LG Len
10 2 98.25 Mbp 0 348.27 Mbp
20 4 79.44 Mbp 1 262.51 Mbp
30 7 62.58 Mbp 2 204.12 Mbp
40 11 45.40 Mbp 3 142.32 Mbp
50 16 39.42 Mbp 4 134.43 Mbp
60 22 33.72 Mbp 6 123.87 Mbp
70 29 26.64 Mbp 8 101.62 Mbp
80 39 17.72 Mbp 10 79.52 Mbp
90 55 8.65 Mbp 16 25.20 Mbp
100 389 71 bp 91 3.06 Kbp
1.000x 390 2.12 Gbp 92 2.13 Gbp
NG based on genome size 2.13 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 May 2021
rCheMyd1.alt.cur.20210528.fasta.gz (556.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 104 1.41 Mbp 104 1.41 Mbp
20 265 1.00 Mbp 265 1.00 Mbp
30 483 0.77 Mbp 482 0.77 Mbp
40 766 0.59 Mbp 765 0.59 Mbp
50 1133 454.33 Kbp 1131 455.48 Kbp
60 1612 347.26 Kbp 1608 348.39 Kbp
70 2261 249.02 Kbp 2254 250.65 Kbp
80 3157 180.84 Kbp 3144 182.37 Kbp
90 4412 125.81 Kbp 4387 127.20 Kbp
100 6796 220 bp 6736 220 bp
1.000x 6797 1.90 Gbp 6737 1.90 Gbp
NG based on genome size 2.13 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.