Chelon labrosus

thicklip grey mullet

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCheLab
  name: Chelon labrosus
  taxon_id: 48171
  common_name: thicklip grey mullet
  order:
    name: Mugiliformes
  family:
    name: Mugilidae
  individuals:
    - short_name: fCheLab1
      biosample_id: SAMEA111562027
      sex:
  genome_size: 772620000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY 2.0 Conall McCaughey (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCheLab1 20.49 Gbp 26.52x 12.4 GiB
Arima fCheLab1 133.83 Gbp 173.22x 39.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.77 Gbp.
Last upload on 13 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCheLab1 PacBio HiFi (.bam) 20.49 Gbp 26.52x 12.4 GiB
Arima 133.83 Gbp 173.22x 39.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.77 Gbp.
Last upload on 13 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 27 September 2023
fCheLab1.pri.cur.20230927.fasta.gz (205.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 6.76 Mbp 3 32.81 Mbp
20 24 4.75 Mbp 5 31.57 Mbp
30 42 3.67 Mbp 7 30.91 Mbp
40 66 2.90 Mbp 10 30.64 Mbp
50 96 2.40 Mbp 12 30.30 Mbp
60 132 1.89 Mbp 15 29.24 Mbp
70 181 1.28 Mbp 18 26.39 Mbp
80 258 0.77 Mbp 21 24.57 Mbp
90 457 130.35 Kbp 27 0.52 Mbp
100 0 0
0.928x 973 0.72 Gbp 363 0.72 Gbp
NG based on genome size 0.77 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 27 September 2023
fCheLab1.alt.cur.20230927.fasta.gz (199.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 2.45 Mbp 24 2.45 Mbp
20 62 1.80 Mbp 62 1.80 Mbp
30 111 1.37 Mbp 111 1.37 Mbp
40 175 1.05 Mbp 175 1.05 Mbp
50 258 0.83 Mbp 258 0.83 Mbp
60 364 0.62 Mbp 364 0.62 Mbp
70 510 433.76 Kbp 510 433.76 Kbp
80 748 236.46 Kbp 748 236.46 Kbp
90 1747 20.55 Kbp 1747 20.55 Kbp
100 0 0
0.904x 1967 0.70 Gbp 1967 0.70 Gbp
NG based on genome size 0.77 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 June 2023
fCheLab1.MT.20230623.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.