Carollia sowelli

Sowell's short-tailed bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mCarSow
  name: Carollia sowelli
  taxon_id: 208969
  common_name: Sowell's short-tailed bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
  - mCarSow1
  genome_size: 2836200000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mCarSow1 101.94 Gbp 35.94x 81.2 GiB
PacBio HiFi (.bam) mCarSow1 101.80 Gbp 35.89x 354.4 GiB
Arima mCarSow1 211.62 Gbp 74.61x 114.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.84 Gbp.
Last upload on 18 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mCarSow1 PacBio HiFi (.fq) 101.94 Gbp 35.94x 81.2 GiB
PacBio HiFi (.bam) 101.80 Gbp 35.89x 354.4 GiB
Arima 211.62 Gbp 74.61x 114.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.84 Gbp.
Last upload on 18 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 11 March 2024
mCarSow1.HiC.hap1.decontam.20240311.fasta.gz (598.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 306.67 Mbp 1 306.67 Mbp
20 3 208.27 Mbp 2 262.69 Mbp
30 4 190.56 Mbp 4 216.30 Mbp
40 6 104.29 Mbp 5 213.39 Mbp
50 11 53.96 Mbp 7 125.55 Mbp
60 16 43.20 Mbp 9 108.89 Mbp
70 26 21.48 Mbp 13 53.96 Mbp
80 70 2.71 Mbp 42 3.15 Mbp
90 0 0
100 0 0
0.895x 572 2.54 Gbp 538 2.54 Gbp
NG based on genome size 2.84 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 11 March 2024
mCarSow1.HiC.hap2.decontam.20240311.fasta.gz (583.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 226.60 Mbp 1 338.67 Mbp
20 3 204.73 Mbp 2 328.98 Mbp
30 5 158.35 Mbp 3 262.21 Mbp
40 7 96.81 Mbp 4 241.16 Mbp
50 11 56.29 Mbp 6 163.65 Mbp
60 16 38.47 Mbp 8 106.83 Mbp
70 26 20.72 Mbp 11 53.51 Mbp
80 193 174.93 Kbp 159 179.88 Kbp
90 0 0
100 0 0
0.804x 320 2.28 Gbp 286 2.28 Gbp
NG based on genome size 2.84 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 11 March 2024
mCarSow1.MT.20240311.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.