Cariama cristata

red-legged seriema

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bCarCri1: GCA_009819825.1 bCarCri1: GCA_009819485.1
ENA bCarCri1: GCA_009819825.1 bCarCri1: GCA_009819485.1
UCSC Genome Browser bCarCri1: GCA_009819825.1 bCarCri1: GCA_009819485.1

metadata.yaml (view) (edit on github)
species:
  short_name: bCarCri
  name: Cariama cristata
  taxon_id: 54380
  common_name: red-legged seriema
  order:
    name: Cariamiformes
  family:
    name: Cariamidae
  individuals:
    - short_name: bCarCri1
  genome_size: 1500000000
  genome_size_method:
  project: [ vgp ]
CC BY-SA 3.0 Olaf Oliviero Riemer (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bCarCri1 76.62 Gbp 51.08x 132.3 GiB
10x bCarCri1 154.31 Gbp 102.87x 72.5 GiB
Bionano bCarCri1 N/A 550.73x 1.3 GiB
Arima bCarCri1 122.21 Gbp 81.47x 62.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.50 Gbp.
Last upload on 17 July 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCarCri1 PacBio CLR 76.62 Gbp 51.08x 132.3 GiB
10x 154.31 Gbp 102.87x 72.5 GiB
Bionano N/A 550.73x 1.3 GiB
Arima 122.21 Gbp 81.47x 62.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.50 Gbp.
Last upload on 17 July 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 September 2019
bCarCri1.pri.cur.20190916.fasta.gz (355.8 MiB)

Quality: 161.2 errors/Mb (QV=37.93)

Contigs Scaffolds
NG LG Len LG Len
10 3 30.46 Mbp 2 48.85 Mbp
20 9 22.16 Mbp 5 45.05 Mbp
30 17 17.93 Mbp 9 37.39 Mbp
40 26 14.09 Mbp 13 30.18 Mbp
50 39 10.66 Mbp 19 23.62 Mbp
60 55 7.81 Mbp 26 20.06 Mbp
70 84 3.85 Mbp 34 15.30 Mbp
80 179 353.06 Kbp 51 2.99 Mbp
90 0 0
100 0 0
0.807x 303 1.21 Gbp 109 1.22 Gbp
NG based on genome size 1.50 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 September 2019
bCarCri1.alt.cur.20190916.fasta.gz (276.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 4.86 Mbp 20 4.86 Mbp
20 59 3.14 Mbp 59 3.14 Mbp
30 121 1.95 Mbp 121 1.95 Mbp
40 217 1.22 Mbp 217 1.22 Mbp
50 395 0.55 Mbp 395 0.55 Mbp
60 1785 43.71 Kbp 1784 43.71 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.620x 2841 0.93 Gbp 2840 0.93 Gbp
NG based on genome size 1.50 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bCarCri1.MT.20190918.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.