Carcharodon carcharias

great white shark

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank sCarCar2: GCA_017639515.1 sCarCar2: GCA_017639455.1
ENA sCarCar2: GCA_017639515.1 sCarCar2: GCA_017639455.1
UCSC Genome Browser sCarCar2: GCA_017639515.1 sCarCar2: GCA_017639455.1

metadata.yaml (view) (edit on github)
species:
  common_name: great white shark
  family:
    name: Lamnidae
  genome_size: 4500000000
  genome_size_method: null
  individuals:
  - short_name: sCarCar2
  name: Carcharodon carcharias
  order:
    name: Lamniformes
  short_name: sCarCar
  taxon_id: 13397
  project: [ vgp ]
CC BY-SA 3.0 Terry Goss (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR sCarCar2 301.28 Gbp 66.95x 530.3 GiB
10x sCarCar2 272.74 Gbp 60.61x 132.9 GiB
Bionano sCarCar2 N/A 244.61x 1.6 GiB
Arima sCarCar2 452.74 Gbp 100.61x 284.5 GiB
Illumina sCarCar2 305.38 Gbp 67.86x 144.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.50 Gbp.
Last upload on 13 July 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sCarCar2 PacBio CLR 301.28 Gbp 66.95x 530.3 GiB
10x 272.74 Gbp 60.61x 132.9 GiB
Bionano N/A 244.61x 1.6 GiB
Arima 452.74 Gbp 100.61x 284.5 GiB
Illumina 305.38 Gbp 67.86x 144.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.50 Gbp.
Last upload on 13 July 2020.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 5 February 2021
sCarCar2.pri.cur.20210205.fasta.gz (1.1 GiB)

Quality: 54.9 errors/Mb (QV=42.61)

Contigs Scaffolds
NG LG Len LG Len
10 11 31.74 Mbp 1 239.77 Mbp
20 29 19.42 Mbp 3 205.64 Mbp
30 57 12.96 Mbp 5 199.47 Mbp
40 100 9.05 Mbp 8 173.48 Mbp
50 162 5.93 Mbp 11 153.34 Mbp
60 258 3.77 Mbp 14 137.46 Mbp
70 416 2.13 Mbp 17 118.54 Mbp
80 738 0.95 Mbp 22 54.60 Mbp
90 1536 310.15 Kbp 37 9.48 Mbp
100 0 0
0.948x 3363 4.27 Gbp 718 4.29 Gbp
NG based on genome size 4.50 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 5 February 2021
sCarCar2.alt.cur.20210205.fasta.gz (1.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 0 0
20 0 0
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.001x 67 6.20 Mbp 39 6.21 Mbp
NG based on genome size 4.50 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
sCarCar2.MT.20191004.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.