Carassius carassius

crucian carp

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fCarCar
  name: Carassius carassius
  taxon_id: 217509
  common_name: crucian carp
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fCarCar2
      biosample_id: SAMEA11296534
      sex: female
  genome_size: 1965780000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-SA 3.0 Piet Spaans (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fCarCar2 75.18 Gbp 38.24x 117.1 GiB
Arima fCarCar2 101.26 Gbp 51.51x 31.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.97 Gbp.
Last upload on 19 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fCarCar2 PacBio HiFi (.bam) 75.18 Gbp 38.24x 117.1 GiB
Arima 101.26 Gbp 51.51x 31.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.97 Gbp.
Last upload on 19 June 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 9 August 2023
fCarCar2.pri.cur.20230809.fasta.gz (478.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 9.05 Mbp 5 41.99 Mbp
20 44 6.51 Mbp 10 35.83 Mbp
30 78 5.22 Mbp 15 34.47 Mbp
40 121 4.06 Mbp 21 33.14 Mbp
50 174 3.29 Mbp 27 31.70 Mbp
60 246 2.35 Mbp 33 30.97 Mbp
70 349 1.51 Mbp 40 29.66 Mbp
80 529 0.72 Mbp 47 26.89 Mbp
90 0 0
100 0 0
0.857x 1110 1.68 Gbp 278 1.68 Gbp
NG based on genome size 1.97 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 9 August 2023
fCarCar2.alt.cur.20230809.fasta.gz (59.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3123 28.09 Kbp 3123 28.09 Kbp
20 0 0
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.107x 3713 209.62 Mbp 3713 209.62 Mbp
NG based on genome size 1.97 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 May 2023
fCarCar2.MT.20230510.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.