Calypte anna

Anna's hummingbird

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bCalAnn1: GCA_003957555.2 bCalAnn1: GCA_003957575.1
ENA bCalAnn1: GCA_003957555.2 bCalAnn1: GCA_003957575.1
UCSC Genome Browser bCalAnn1: GCA_003957555.2 bCalAnn1: GCA_003957575.1

metadata.yaml (view) (edit on github)
species:
  short_name: bCalAnn
  name: Calypte anna
  taxon_id: 9244
  common_name: Anna's hummingbird
  order:
    name: Apodiformes
  family:
    name: Trochilidae
  individuals:
    - short_name: bCalAnn1
  genome_size: 1116472572
  genome_size_method:
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bCalAnn1 77.03 Gbp 68.99x 231.6 GiB
10x bCalAnn1 56.08 Gbp 50.23x 32.7 GiB
Bionano bCalAnn1 N/A 750.98x 1.0 GiB
Arima bCalAnn1 149.79 Gbp 134.16x 79.4 GiB
Dovetail Genomics bCalAnn1 100.66 Gbp 90.16x 58.9 GiB
Phase bCalAnn1 21.80 Gbp 19.53x 11.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.12 Gbp.
Last upload on 10 July 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bCalAnn1 PacBio CLR 77.03 Gbp 68.99x 231.6 GiB
10x 56.08 Gbp 50.23x 32.7 GiB
Bionano N/A 750.98x 1.0 GiB
Arima 149.79 Gbp 134.16x 79.4 GiB
Dovetail Genomics 100.66 Gbp 90.16x 58.9 GiB
Phase 21.80 Gbp 19.53x 11.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.12 Gbp.
Last upload on 10 July 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 September 2018
bCalAnn1.pri.cur.20180926.fasta.gz (303.3 MiB)

Quality: 138.0 errors/Mb (QV=38.60)

Contigs Scaffolds
NG LG Len LG Len
10 2 39.66 Mbp 0 197.55 Mbp
20 5 30.11 Mbp 1 151.34 Mbp
30 9 22.66 Mbp 1 151.34 Mbp
40 15 16.29 Mbp 2 114.81 Mbp
50 23 12.77 Mbp 4 44.75 Mbp
60 32 9.35 Mbp 7 35.40 Mbp
70 50 4.55 Mbp 10 25.69 Mbp
80 91 1.88 Mbp 16 17.70 Mbp
90 224 359.07 Kbp 24 7.71 Mbp
100 0 0
0.935x 588 1.04 Gbp 159 1.06 Gbp
NG based on genome size 1.12 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 19 October 2018
bCalAnn1.alt.cur.20181019.fasta.gz (278.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 3.98 Mbp 19 3.98 Mbp
20 50 3.14 Mbp 50 3.14 Mbp
30 91 2.34 Mbp 91 2.34 Mbp
40 148 1.58 Mbp 148 1.58 Mbp
50 231 1.15 Mbp 231 1.15 Mbp
60 355 0.73 Mbp 355 0.73 Mbp
70 563 379.11 Kbp 563 379.11 Kbp
80 1273 55.26 Kbp 1273 55.32 Kbp
90 0 0
100 0 0
0.853x 3809 0.95 Gbp 3803 0.95 Gbp
NG based on genome size 1.12 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
bCalAnn1.MT.20191002.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.