Borostomias antarcticus

large-eye snaggletooth

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fBorAnt1: GCA_949987555.1 fBorAnt1: GCA_949987545.1
ENA fBorAnt1: GCA_949987555.1 fBorAnt1: GCA_949987545.1
UCSC Genome Browser fBorAnt1: GCA_949987555.1 fBorAnt1: GCA_949987545.1

metadata.yaml (view) (edit on github)
species:
  short_name: fBorAnt
  name: Borostomias antarcticus
  taxon_id: 473354
  common_name: large-eye snaggletooth
  order:
    name: Stomiiformes
  family:
    name: Stomiidae
  individuals:
    - short_name: fBorAnt1
      biosample_id: SAMEA8748812
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-NC-SA 4.0 Gonzalo Mucientes Sandoval (iNaturalist)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fBorAnt1 52.11 Gbp 57.32x 95.2 GiB
Arima fBorAnt1 115.16 Gbp 126.65x 55.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.91 Gbp.
Last upload on 21 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fBorAnt1 PacBio HiFi (.bam) 52.11 Gbp 57.32x 95.2 GiB
Arima 115.16 Gbp 126.65x 55.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.91 Gbp.
Last upload on 21 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 21 April 2023
fBorAnt1.pri.cur.20230421.fasta.gz (228.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 5.06 Mbp 2 42.52 Mbp
20 41 2.58 Mbp 5 34.92 Mbp
30 82 1.90 Mbp 7 31.57 Mbp
40 139 1.35 Mbp 10 28.91 Mbp
50 219 0.96 Mbp 14 27.27 Mbp
60 334 0.67 Mbp 17 25.15 Mbp
70 507 412.68 Kbp 21 21.38 Mbp
80 818 216.00 Kbp 26 11.61 Mbp
90 1443 94.03 Kbp 50 1.36 Mbp
100 4009 1.00 Kbp 1378 1.00 Kbp
1.000x 4009 0.91 Gbp 1378 0.91 Gbp
NG based on genome size 0.91 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 April 2023
fBorAnt1.alt.cur.20230421.fasta.gz (207.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 33 1.81 Mbp 33 1.81 Mbp
20 89 1.17 Mbp 89 1.17 Mbp
30 173 0.79 Mbp 173 0.79 Mbp
40 290 0.57 Mbp 290 0.57 Mbp
50 455 404.73 Kbp 455 404.73 Kbp
60 691 279.03 Kbp 691 279.03 Kbp
70 1043 179.61 Kbp 1043 179.61 Kbp
80 1625 103.66 Kbp 1625 103.66 Kbp
90 2749 48.83 Kbp 2749 48.83 Kbp
100 5761 1.84 Kbp 5761 1.84 Kbp
1.000x 5761 0.79 Gbp 5761 0.79 Gbp
NG based on genome size 0.91 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.