Balearica regulorum

grey crowned-crane

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bBalReg1: GCA_011004875.1 bBalReg1: GCA_011004865.1
ENA bBalReg1: GCA_011004875.1 bBalReg1: GCA_011004865.1
UCSC Genome Browser bBalReg1: GCA_011004875.1 bBalReg1: GCA_011004865.1

metadata.yaml (view) (edit on github)
species:
  common_name: grey crowned-crane
  family:
    name: Gruidae
  genome_size: 1450000000
  genome_size_method: null
  individuals:
  - short_name: bBalReg1
  name: Balearica regulorum
  order:
    name: Gruiformes
  short_name: bBalReg
  taxon_id: 925459
  project: [ vgp ]
(pixabay)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bBalReg1 86.29 Gbp 59.51x 146.8 GiB
10x bBalReg1 156.29 Gbp 107.79x 76.4 GiB
Bionano bBalReg1 N/A 444.79x 0.9 GiB
Arima bBalReg1 93.71 Gbp 64.63x 56.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.45 Gbp.
Last upload on 15 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bBalReg1 PacBio CLR 86.29 Gbp 59.51x 146.8 GiB
10x 156.29 Gbp 107.79x 76.4 GiB
Bionano N/A 444.79x 0.9 GiB
Arima 93.71 Gbp 64.63x 56.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.45 Gbp.
Last upload on 15 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 December 2019
bBalReg1.pri.cur.20191204.fasta.gz (356.3 MiB)

Quality: 33.9 errors/Mb (QV=44.69)

Contigs Scaffolds
NG LG Len LG Len
10 1 69.38 Mbp 0 219.27 Mbp
20 4 60.01 Mbp 1 168.56 Mbp
30 7 36.26 Mbp 2 126.49 Mbp
40 12 24.66 Mbp 3 87.60 Mbp
50 18 19.78 Mbp 5 71.44 Mbp
60 27 14.95 Mbp 8 36.29 Mbp
70 38 9.39 Mbp 14 23.27 Mbp
80 68 1.98 Mbp 23 8.43 Mbp
90 0 0
100 0 0
0.839x 248 1.22 Gbp 104 1.22 Gbp
NG based on genome size 1.45 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 December 2019
bBalReg1.alt.cur.20191204.fasta.gz (307.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 21 5.61 Mbp 21 5.61 Mbp
20 52 3.92 Mbp 52 3.92 Mbp
30 95 3.00 Mbp 95 3.00 Mbp
40 151 2.28 Mbp 151 2.28 Mbp
50 225 1.66 Mbp 225 1.66 Mbp
60 340 0.97 Mbp 340 0.97 Mbp
70 634 163.49 Kbp 634 164.84 Kbp
80 0 0
90 0 0
100 0 0
0.719x 975 1.04 Gbp 971 1.04 Gbp
NG based on genome size 1.45 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
bBalReg1.MT.20191216.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.