Balaenoptera ricei

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Resource Primary Assembly Alternate Assembly
GenBank mBalRic1: GCA_028017805.1 mBalRic1: GCA_028023285.1
ENA mBalRic1: GCA_028017805.1 mBalRic1: GCA_028023285.1
UCSC Genome Browser mBalRic1: GCA_028017805.1 mBalRic1: GCA_028023285.1

CC BY-SA 4.0 Maria Beatriz Soares (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mBalRic1 85.07 Gbp 31.76x 65.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.68 Gbp.
Last upload on 25 August 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mBalRic1 PacBio HiFi (.fq) 85.07 Gbp 31.76x 65.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.68 Gbp.
Last upload on 25 August 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 25 November 2022
mBalRic1.pri.cur.20221125.fasta.gz (727.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 101.99 Mbp 1 188.26 Mbp
20 5 81.64 Mbp 2 182.69 Mbp
30 9 67.12 Mbp 4 143.51 Mbp
40 13 53.00 Mbp 6 123.25 Mbp
50 19 36.54 Mbp 8 122.07 Mbp
60 27 29.69 Mbp 11 107.34 Mbp
70 38 19.31 Mbp 13 103.17 Mbp
80 55 12.17 Mbp 16 89.66 Mbp
90 106 2.07 Mbp 19 64.77 Mbp
100 1107 1.00 Kbp 773 1.00 Kbp
1.000x 1108 2.68 Gbp 774 2.68 Gbp
NG based on genome size 2.68 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 25 November 2022
mBalRic1.alt.cur.20221125.fasta.gz (56.4 KiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 0 186.68 Kbp 0 186.68 Kbp
20 0 186.68 Kbp 0 186.68 Kbp
30 0 186.68 Kbp 0 186.68 Kbp
40 0 186.68 Kbp 0 186.68 Kbp
50 0 186.68 Kbp 0 186.68 Kbp
60 0 186.68 Kbp 0 186.68 Kbp
70 0 186.68 Kbp 0 186.68 Kbp
80 0 186.68 Kbp 0 186.68 Kbp
90 0 186.68 Kbp 0 186.68 Kbp
100 0 186.68 Kbp 0 186.68 Kbp
1.000x 1 186.68 Kbp 1 186.68 Kbp
NG based on genome size 2.68 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 25 September 2022
mBalRic1.HiC.hap1.20220925.fasta.gz (738.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 104.75 Mbp 1 174.67 Mbp
20 5 89.69 Mbp 3 146.21 Mbp
30 9 67.13 Mbp 5 128.76 Mbp
40 13 47.55 Mbp 7 118.12 Mbp
50 20 36.00 Mbp 10 109.39 Mbp
60 29 28.47 Mbp 12 106.29 Mbp
70 42 18.74 Mbp 15 93.25 Mbp
80 61 10.20 Mbp 18 85.15 Mbp
90 127 1.88 Mbp 42 2.82 Mbp
100 1168 11.69 Kbp 1037 11.69 Kbp
1.000x 1169 2.78 Gbp 1038 2.84 Gbp
NG based on genome size 2.68 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 25 September 2022
mBalRic1.HiC.hap2.20220925.fasta.gz (727.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 101.99 Mbp 1 179.85 Mbp
20 5 81.64 Mbp 2 172.57 Mbp
30 9 67.12 Mbp 4 142.10 Mbp
40 13 53.00 Mbp 7 114.25 Mbp
50 19 36.54 Mbp 9 108.20 Mbp
60 27 29.69 Mbp 11 105.43 Mbp
70 38 19.31 Mbp 14 91.10 Mbp
80 55 12.17 Mbp 17 80.35 Mbp
90 106 2.07 Mbp 27 2.92 Mbp
100 1108 1.00 Kbp 974 1.00 Kbp
1.000x 1109 2.68 Gbp 975 2.69 Gbp
NG based on genome size 2.68 Gbp.
Assembly Metadata
assembly_vgp_HiC_2.0/mBalRic1.yaml (view)
species: Balaenoptera ricei
specimen: mBalRic1
projects:
  - vgp
hap2: s3://genomeark/species/Balaenoptera_ricei/mBalRic1/assembly_vgp_HiC_2.0/mBalRic1.HiC.hap2.20220925.fasta.gz
hap2_pretext: s3://genomeark/species/Balaenoptera_ricei/mBalRic1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/mBalRic1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Balaenoptera_ricei/mBalRic1/assembly_vgp_HiC_2.0/evaluation/merqury/mBalRic1_png
pacbio_read_dir: s3://genomeark/species/Balaenoptera_ricei/mBalRic1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
bionano_cmap_dir: s3://genomeark/species/Balaenoptera_ricei/mBalRic1/genomic_data/bionano/
hic_read_dir: SRR10331558
pipeline:
  - hifiasm (0.16.1+galaxy3)
  - yahs (1.2a+galaxy1)
assembled_by_group: Rockefeller
notes: Since mBalRic1 seems to be a homogametic specimen we only submit hap2 for manual curation, but hap1 is also uploaded in case it is needed. For Hi-C reads we put the SRR accession number as they were from DNAzoo. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.