Asterias rubens

common starfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank eAstRub1: GCA_902459465.3 eAstRub1: GCA_902459445.1
ENA eAstRub1: GCA_902459465.3 eAstRub1: GCA_902459445.1
UCSC Genome Browser eAstRub1: GCA_902459465.3 eAstRub1: GCA_902459445.1

metadata.yaml (view) (edit on github)
species:
  short_name: eAstRub
  name: Asterias rubens
  taxon_id: 7604
  common_name: common starfish
  order:
    name: Forcipulatida
  family:
    name: Asteriidae
  individuals:
    - short_name: eAstRub1
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 4.0, Hans Hillewaert (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR eAstRub1 47.02 Gbp 112.59x 83.9 GiB
Dovetail Genomics eAstRub1 121.28 Gbp 290.42x 77.7 GiB
Illumina eAstRub1 119.26 Gbp 285.57x 78.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 417.60 Mbp.
Last upload on 8 August 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
eAstRub1 PacBio CLR 47.02 Gbp 112.59x 83.9 GiB
Dovetail Genomics 121.28 Gbp 290.42x 77.7 GiB
Illumina 119.26 Gbp 285.57x 78.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 417.60 Mbp.
Last upload on 8 August 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 9 August 2019
eAstRub1.pri.cur.20190809.fasta.gz (119.3 MiB)

Quality: 35.1 errors/Mb (QV=44.54)

Contigs Scaffolds
NG LG Len LG Len
10 10 2.88 Mbp 1 25.66 Mbp
20 26 2.43 Mbp 3 22.72 Mbp
30 45 2.02 Mbp 4 22.60 Mbp
40 67 1.76 Mbp 6 21.89 Mbp
50 93 1.38 Mbp 8 20.56 Mbp
60 126 1.11 Mbp 10 18.07 Mbp
70 168 0.88 Mbp 13 14.67 Mbp
80 224 0.63 Mbp 16 13.49 Mbp
90 306 390.85 Kbp 19 12.66 Mbp
100 620 6.70 Kbp 149 13.68 Kbp
1.000x 621 417.45 Mbp 150 417.60 Mbp
NG based on genome size 417.60 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 9 August 2019
eAstRub1.alt.cur.20190809.fasta.gz (112.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 69 417.50 Kbp 69 417.50 Kbp
20 177 317.25 Kbp 177 317.25 Kbp
30 316 250.09 Kbp 316 250.09 Kbp
40 492 201.45 Kbp 492 201.45 Kbp
50 709 161.27 Kbp 709 161.27 Kbp
60 984 125.50 Kbp 984 125.50 Kbp
70 1340 95.76 Kbp 1340 95.76 Kbp
80 1811 70.84 Kbp 1811 70.84 Kbp
90 2485 46.60 Kbp 2485 46.60 Kbp
100 3969 135 bp 3968 135 bp
1.000x 3970 390.77 Mbp 3969 390.77 Mbp
NG based on genome size 417.60 Mbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 December 2019
eAstRub1.MT.20191207.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.