Ascidiella aspersa

A solitary sea squirt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kaAscAspe
  name: Ascidiella aspersa
  taxon_id: 201961
  common_name: A solitary sea squirt
  order:
    name: Phlebobranchia
  family:
    name: Ascidiidae
  individuals:
    - short_name: kaAscAspe10
      biosample_id: SAMEA110449820
      sex:
    - short_name: kaAscAspe2
      biosample_id: SAMEA7536462
      sex:
  genome_size: 107580000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-SA 4.0 Frédéric André (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kaAscAspe10 18.95 Gbp 176.16x 7.6 GiB
Arima kaAscAspe2 55.19 Gbp 513.04x 16.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 107.58 Mbp.
Last upload on 29 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kaAscAspe2 Arima 55.19 Gbp 513.04x 16.5 GiB
kaAscAspe10 PacBio HiFi (.bam) 18.95 Gbp 176.16x 7.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 107.58 Mbp.
Last upload on 29 November 2023.
Assemblies
Individual 10 Primary Assembly
Version assembly_curated from 26 January 2024
kaAscAspe10.pri.cur.20240126.fasta.gz (86.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 14.64 Mbp 1 40.96 Mbp
20 2 12.60 Mbp 1 40.96 Mbp
30 3 12.13 Mbp 1 40.96 Mbp
40 4 11.29 Mbp 2 39.76 Mbp
50 5 11.00 Mbp 2 39.76 Mbp
60 6 9.68 Mbp 2 39.76 Mbp
70 7 9.55 Mbp 2 39.76 Mbp
80 8 9.51 Mbp 3 39.45 Mbp
90 9 9.04 Mbp 3 39.45 Mbp
100 10 8.49 Mbp 3 39.45 Mbp
2.868x 468 308.50 Mbp 75 308.57 Mbp
NG based on genome size 107.58 Mbp.
Individual 10 Alternate Assembly
Version assembly_curated from 26 January 2024
kaAscAspe10.alt.cur.20240126.fasta.gz (86.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 2.06 Mbp 5 2.06 Mbp
20 10 1.71 Mbp 10 1.71 Mbp
30 17 1.47 Mbp 17 1.47 Mbp
40 26 1.24 Mbp 26 1.24 Mbp
50 35 1.11 Mbp 35 1.11 Mbp
60 45 1.02 Mbp 45 1.02 Mbp
70 56 0.96 Mbp 56 0.96 Mbp
80 67 0.89 Mbp 67 0.89 Mbp
90 80 0.82 Mbp 80 0.82 Mbp
100 93 0.77 Mbp 93 0.77 Mbp
2.883x 2641 310.14 Mbp 2639 310.14 Mbp
NG based on genome size 107.58 Mbp.
Individual 10 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 December 2023
kaAscAspe10.MT.20231207.fasta.gz (7.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.