Argentina silus

greater argentine

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fArgSil1: GCA_951799395.1 fArgSil1: GCA_951799415.1
ENA fArgSil1: GCA_951799395.1 fArgSil1: GCA_951799415.1
UCSC Genome Browser fArgSil1: GCA_951799395.1 fArgSil1: GCA_951799415.1

metadata.yaml (view) (edit on github)
species:
  short_name: fArgSil
  name: Argentina silus
  taxon_id: 446415
  common_name: greater argentine
  order:
    name: Osmeriformes
  family:
    name: Argentinidae
  individuals:
    - short_name: fArgSil1
      biosample_id: SAMEA110137623
      sex: male
  genome_size: 831300000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY 2.0 SEFSC Pascagoula Laboratory; Collection of Brandi Noble, NOAA/NMFS/SEFSC (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fArgSil1 43.65 Gbp 52.51x 137.8 GiB
Arima fArgSil1 135.13 Gbp 162.55x 42.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.83 Gbp.
Last upload on 10 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fArgSil1 PacBio HiFi (.bam) 43.65 Gbp 52.51x 137.8 GiB
Arima 135.13 Gbp 162.55x 42.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.83 Gbp.
Last upload on 10 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2023
fArgSil1.pri.cur.20230523.fasta.gz (176.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 3.45 Mbp 2 53.08 Mbp
20 52 1.89 Mbp 4 35.03 Mbp
30 105 1.28 Mbp 7 25.59 Mbp
40 184 0.86 Mbp 10 24.54 Mbp
50 301 0.59 Mbp 14 23.08 Mbp
60 489 334.20 Kbp 18 19.73 Mbp
70 851 148.58 Kbp 22 16.51 Mbp
80 2241 17.70 Kbp 470 18.12 Kbp
90 0 0
100 0 0
0.806x 2776 0.67 Gbp 1024 0.67 Gbp
NG based on genome size 0.83 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2023
fArgSil1.alt.cur.20230523.fasta.gz (146.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 70 0.81 Mbp 70 0.81 Mbp
20 202 0.51 Mbp 202 0.51 Mbp
30 415 306.99 Kbp 415 306.99 Kbp
40 758 191.45 Kbp 758 191.45 Kbp
50 1338 108.13 Kbp 1338 108.13 Kbp
60 2600 40.45 Kbp 2600 40.45 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.662x 4805 0.55 Gbp 4805 0.55 Gbp
NG based on genome size 0.83 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.