Archocentrus centrarchus

flier cichlid

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fArcCen1: GCA_007364275.2 fArcCen1: GCA_007364235.1
ENA fArcCen1: GCA_007364275.2 fArcCen1: GCA_007364235.1
UCSC Genome Browser fArcCen1: GCA_007364275.2 fArcCen1: GCA_007364235.1

metadata.yaml (view) (edit on github)
species:
  short_name: fArcCen
  name: Archocentrus centrarchus
  taxon_id: 63155
  common_name: flier cichlid
  order:
    name: Cichliformes
  family:
    name: Cichlidae
  individuals:
    - short_name: fArcCen1
  genome_size: 988048114
  genome_size_method:
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fArcCen1 76.00 Gbp 76.92x 131.5 GiB
10x fArcCen1 37.52 Gbp 37.98x 24.7 GiB
Bionano fArcCen1 N/A 1140.18x 1.8 GiB
Phase fArcCen1 93.28 Gbp 94.41x 56.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.99 Gbp.
Last upload on 25 September 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fArcCen1 PacBio CLR 76.00 Gbp 76.92x 131.5 GiB
10x 37.52 Gbp 37.98x 24.7 GiB
Bionano N/A 1140.18x 1.8 GiB
Phase 93.28 Gbp 94.41x 56.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.99 Gbp.
Last upload on 25 September 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 February 2019
fArcCen1.pri.cur.20190208.fasta.gz (266.9 MiB)

Quality: 335.5 errors/Mb (QV=34.74)

Contigs Scaffolds
NG LG Len LG Len
10 14 5.48 Mbp 2 39.88 Mbp
20 36 4.03 Mbp 4 38.52 Mbp
30 64 3.05 Mbp 7 36.50 Mbp
40 101 2.49 Mbp 10 36.04 Mbp
50 145 2.01 Mbp 12 35.59 Mbp
60 201 1.58 Mbp 15 31.46 Mbp
70 274 1.11 Mbp 19 29.29 Mbp
80 386 0.69 Mbp 22 24.62 Mbp
90 621 201.02 Kbp 39 2.57 Mbp
100 0 0
0.927x 932 0.92 Gbp 188 0.93 Gbp
NG based on genome size 0.99 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 February 2019
fArcCen1.alt.cur.20190208.fasta.gz (307.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 50 1.51 Mbp 50 1.51 Mbp
20 129 1.09 Mbp 129 1.09 Mbp
30 232 0.85 Mbp 232 0.85 Mbp
40 365 0.65 Mbp 365 0.65 Mbp
50 541 491.40 Kbp 541 493.47 Kbp
60 780 349.51 Kbp 778 350.62 Kbp
70 1130 222.43 Kbp 1126 223.63 Kbp
80 1822 89.37 Kbp 1811 90.80 Kbp
90 3523 42.85 Kbp 3506 42.91 Kbp
100 6584 24.23 Kbp 6563 24.26 Kbp
1.046x 9305 1.03 Gbp 9292 1.03 Gbp
NG based on genome size 0.99 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 1 October 2019
fArcCen1.MT.20191001.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.