Antennarius maculatus

warty frogfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fAntMac1: GCA_013358685.1 fAntMac1: GCA_013347815.1
ENA fAntMac1: GCA_013358685.1 fAntMac1: GCA_013347815.1
UCSC Genome Browser fAntMac1: GCA_013358685.1 fAntMac1: GCA_013347815.1

metadata.yaml (view) (edit on github)
species:
  common_name: warty frogfish
  family:
    name: Antennariidae
  genome_size: 604861782
  genome_size_method: meryl
  individuals:
  - short_name: fAntMac1
  name: Antennarius maculatus
  order:
    name: Lophiiformes
  short_name: fAntMac
  taxon_id: 882753
  project: [ vgp ]
CC BY-SA 2.0 Bernard DUPONT (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fAntMac1 85.32 Gbp 141.06x 147.5 GiB
10x fAntMac1 44.14 Gbp 72.97x 25.8 GiB
Bionano fAntMac1 N/A 1705.08x 1.9 GiB
Phase fAntMac1 72.52 Gbp 119.89x 44.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.60 Gbp.
Last upload on 10 July 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAntMac1 PacBio CLR 85.32 Gbp 141.06x 147.5 GiB
10x 44.14 Gbp 72.97x 25.8 GiB
Bionano N/A 1705.08x 1.9 GiB
Phase 72.52 Gbp 119.89x 44.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.60 Gbp.
Last upload on 10 July 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 February 2020
fAntMac1.pri.cur.20200204.fasta.gz (157.5 MiB)

Quality: 50.8 errors/Mb (QV=42.94)

Contigs Scaffolds
NG LG Len LG Len
10 2 21.05 Mbp 1 28.82 Mbp
20 5 18.16 Mbp 4 26.55 Mbp
30 9 14.48 Mbp 6 25.71 Mbp
40 13 13.43 Mbp 8 24.91 Mbp
50 19 9.07 Mbp 11 21.94 Mbp
60 26 7.07 Mbp 14 21.04 Mbp
70 38 3.53 Mbp 17 20.25 Mbp
80 64 1.27 Mbp 20 17.71 Mbp
90 256 71.21 Kbp 57 130.25 Kbp
100 0 0
0.908x 373 0.55 Gbp 154 0.55 Gbp
NG based on genome size 0.60 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 February 2020
fAntMac1.alt.cur.20200204.fasta.gz (154.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 43 1.16 Mbp 43 1.16 Mbp
20 102 0.89 Mbp 102 0.89 Mbp
30 188 0.58 Mbp 188 0.58 Mbp
40 312 425.25 Kbp 312 425.25 Kbp
50 477 312.55 Kbp 477 312.55 Kbp
60 701 233.87 Kbp 701 233.87 Kbp
70 1007 167.14 Kbp 1007 167.14 Kbp
80 1463 104.03 Kbp 1463 104.03 Kbp
90 0 0
100 0 0
0.877x 2294 0.53 Gbp 2294 0.53 Gbp
NG based on genome size 0.60 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 October 2019
fAntMac1.MT.20191005.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.