Anguilla anguilla

European eel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fAngAng1: GCA_013347855.1 fAngAng1: GCA_013347865.1
ENA fAngAng1: GCA_013347855.1 fAngAng1: GCA_013347865.1
UCSC Genome Browser fAngAng1: GCA_013347855.1 fAngAng1: GCA_013347865.1

metadata.yaml (view) (edit on github)
species:
  short_name: fAngAng
  name: Anguilla anguilla
  taxon_id: 7936
  common_name: European eel
  order:
    name: Anguilliformes
  family:
    name: Anguillidae
  individuals:
    - short_name: fAngAng1
  genome_size: 1355153153
  genome_size_method: meryl
  project: [ vgp ]
CC BY-SA 2.0 Bernard DUPONT (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fAngAng1 69.48 Gbp 51.27x 118.8 GiB
10x fAngAng1 83.04 Gbp 61.28x 40.4 GiB
Bionano fAngAng1 N/A 369.52x 640.0 MiB
Arima fAngAng1 98.69 Gbp 72.83x 47.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 17 September 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAngAng1 PacBio CLR 69.48 Gbp 51.27x 118.8 GiB
10x 83.04 Gbp 61.28x 40.4 GiB
Bionano N/A 369.52x 640.0 MiB
Arima 98.69 Gbp 72.83x 47.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 17 September 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 February 2020
fAngAng1.pri.cur.20200204.fasta.gz (279.6 MiB)

Quality: 31.1 errors/Mb (QV=45.08)

Contigs Scaffolds
NG LG Len LG Len
10 7 13.18 Mbp 1 76.64 Mbp
20 20 8.82 Mbp 3 68.14 Mbp
30 38 6.38 Mbp 5 62.03 Mbp
40 64 4.32 Mbp 7 56.16 Mbp
50 105 2.64 Mbp 10 44.52 Mbp
60 184 1.22 Mbp 13 41.50 Mbp
70 393 252.34 Kbp 17 31.57 Mbp
80 0 0
90 0 0
100 0 0
0.720x 693 0.98 Gbp 53 0.98 Gbp
NG based on genome size 1.36 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 February 2020
fAngAng1.alt.cur.20200204.fasta.gz (278.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 53 1.86 Mbp 53 1.86 Mbp
20 147 1.16 Mbp 147 1.16 Mbp
30 282 0.86 Mbp 282 0.86 Mbp
40 467 0.61 Mbp 467 0.61 Mbp
50 728 449.82 Kbp 728 449.82 Kbp
60 1109 274.26 Kbp 1109 274.26 Kbp
70 1947 72.95 Kbp 1947 72.95 Kbp
80 0 0
90 0 0
100 0 0
0.712x 2338 0.97 Gbp 2338 0.97 Gbp
NG based on genome size 1.36 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.