Anableps anableps

largescale foureyes

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fAnaAna1: GCA_014839685.1 fAnaAna1: GCA_014839705.1
ENA fAnaAna1: GCA_014839685.1 fAnaAna1: GCA_014839705.1
UCSC Genome Browser fAnaAna1: GCA_014839685.1 fAnaAna1: GCA_014839705.1

metadata.yaml (view) (edit on github)
species:
  short_name: fAnaAna
  name: Anableps anableps
  taxon_id: 195821
  common_name: largescale foureyes
  order:
    name: Cyprinodontiformes
  family:
    name: Anablepidae
  individuals:
    - short_name: fAnaAna1
  genome_size: 939460000
  genome_size_method: 10X Genomics Supernova assembly 
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fAnaAna1 59.05 Gbp 62.85x 104.3 GiB
10x fAnaAna1 68.55 Gbp 72.96x 32.4 GiB
Bionano fAnaAna1 N/A 630.71x 887.5 MiB
Arima fAnaAna1 144.05 Gbp 153.33x 92.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.94 Gbp.
Last upload on 19 July 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAnaAna1 PacBio CLR 59.05 Gbp 62.85x 104.3 GiB
10x 68.55 Gbp 72.96x 32.4 GiB
Bionano N/A 630.71x 887.5 MiB
Arima 144.05 Gbp 153.33x 92.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.94 Gbp.
Last upload on 19 July 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 May 2020
fAnaAna1.pri.cur.20200514.fasta.gz (253.1 MiB)

Quality: 80.9 errors/Mb (QV=40.92)

Contigs Scaffolds
NG LG Len LG Len
10 2 34.38 Mbp 2 42.23 Mbp
20 5 26.44 Mbp 4 41.11 Mbp
30 9 22.98 Mbp 6 40.29 Mbp
40 13 20.03 Mbp 9 40.05 Mbp
50 19 15.30 Mbp 11 38.41 Mbp
60 26 10.93 Mbp 14 34.78 Mbp
70 36 8.69 Mbp 16 33.03 Mbp
80 49 4.99 Mbp 19 31.64 Mbp
90 77 1.98 Mbp 22 24.73 Mbp
100 0 0
0.923x 139 0.87 Gbp 32 0.87 Gbp
NG based on genome size 0.94 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 May 2020
fAnaAna1.alt.cur.20200514.fasta.gz (134.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 319 207.46 Kbp 319 207.46 Kbp
20 901 131.59 Kbp 901 131.59 Kbp
30 1803 83.37 Kbp 1803 83.37 Kbp
40 3224 52.81 Kbp 3224 52.81 Kbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.474x 5088 445.54 Mbp 5088 445.54 Mbp
NG based on genome size 0.94 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 1 October 2019
fAnaAna1.MT.20191001.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.