Ammodytes marinus

lesser sand-eel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fAmmMar1: GCA_949987685.1 fAmmMar1: GCA_950004245.1
ENA fAmmMar1: GCA_949987685.1 fAmmMar1: GCA_950004245.1
UCSC Genome Browser fAmmMar1: GCA_949987685.1 fAmmMar1: GCA_950004245.1

metadata.yaml (view) (edit on github)
species:
  short_name: fAmmMar
  name: Ammodytes marinus
  taxon_id: 146480
  common_name: lesser sand-eel
  order:
    name: Perciformes
  family:
    name: Ammodytidae
  individuals:
    - short_name: fAmmMar1
      biosample_id: SAMEA110137622
      sex: female
  genome_size: 613695000
  genome_size_method: GoaT
  project: [ vgp ]
CC BY-SA 2.0 Walter Baxter (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fAmmMar1 35.04 Gbp 57.09x 94.7 GiB
Arima fAmmMar1 273.83 Gbp 446.21x 83.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.61 Gbp.
Last upload on 22 April 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fAmmMar1 PacBio HiFi (.bam) 35.04 Gbp 57.09x 94.7 GiB
Arima 273.83 Gbp 446.21x 83.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.61 Gbp.
Last upload on 22 April 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 21 April 2023
fAmmMar1.pri.cur.20230421.fasta.gz (218.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 8 5.46 Mbp 2 37.46 Mbp
20 22 4.24 Mbp 4 36.69 Mbp
30 37 3.63 Mbp 5 35.78 Mbp
40 56 2.86 Mbp 7 33.56 Mbp
50 79 2.54 Mbp 9 33.22 Mbp
60 105 2.18 Mbp 11 32.61 Mbp
70 136 1.75 Mbp 13 31.42 Mbp
80 176 1.34 Mbp 15 30.11 Mbp
90 229 1.00 Mbp 17 28.48 Mbp
100 304 0.66 Mbp 19 27.02 Mbp
1.267x 1634 0.78 Gbp 617 0.78 Gbp
NG based on genome size 0.61 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 April 2023
fAmmMar1.alt.cur.20230421.fasta.gz (214.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 29 1.71 Mbp 29 1.71 Mbp
20 71 1.28 Mbp 71 1.28 Mbp
30 125 1.03 Mbp 125 1.03 Mbp
40 191 0.83 Mbp 191 0.83 Mbp
50 273 0.67 Mbp 273 0.67 Mbp
60 373 0.56 Mbp 373 0.56 Mbp
70 495 460.97 Kbp 495 460.97 Kbp
80 646 357.70 Kbp 646 357.70 Kbp
90 845 268.58 Kbp 845 268.58 Kbp
100 1122 178.40 Kbp 1121 179.14 Kbp
1.232x 3620 0.76 Gbp 3619 0.76 Gbp
NG based on genome size 0.61 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.