Acanthisitta chloris

rifleman

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bAcaChl1: GCA_016904835.1 bAcaChl1: GCA_016880875.1
ENA bAcaChl1: GCA_016904835.1 bAcaChl1: GCA_016880875.1
UCSC Genome Browser bAcaChl1: GCA_016904835.1 bAcaChl1: GCA_016880875.1

metadata.yaml (view) (edit on github)
species:
  short_name: bAcaChl
  name: Acanthisitta chloris
  taxon_id: 57068
  common_name: rifleman
  order:
    name: Passeriformes
  family:
    name: Acanthisittidae
  individuals:
    - short_name: bAcaChl1
  genome_size: 1050000000
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.0 digitaltrails (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bAcaChl1 68.95 Gbp 65.67x 118.5 GiB
10x bAcaChl1 78.23 Gbp 74.50x 36.4 GiB
Bionano bAcaChl1 N/A 592.44x 639.9 MiB
Arima bAcaChl4 94.23 Gbp 89.74x 56.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.05 Gbp.
Last upload on 17 September 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAcaChl1 PacBio CLR 68.95 Gbp 65.67x 118.5 GiB
10x 78.23 Gbp 74.50x 36.4 GiB
Bionano N/A 592.44x 639.9 MiB
bAcaChl4 Arima 94.23 Gbp 89.74x 56.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.05 Gbp.
Last upload on 17 September 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 May 2021
bAcaChl1.pri.cur.20210526.fasta.gz (311.4 MiB)

Quality: 240.7 errors/Mb (QV=36.19)

Contigs Scaffolds
NG LG Len LG Len
10 1 57.89 Mbp 0 136.57 Mbp
20 3 40.40 Mbp 1 96.25 Mbp
30 6 36.90 Mbp 3 62.81 Mbp
40 10 24.09 Mbp 4 51.96 Mbp
50 15 16.73 Mbp 7 40.83 Mbp
60 22 13.37 Mbp 9 34.43 Mbp
70 31 9.52 Mbp 13 24.09 Mbp
80 44 5.94 Mbp 18 20.30 Mbp
90 68 2.84 Mbp 24 15.24 Mbp
100 141 469.88 Kbp 35 5.17 Mbp
1.022x 400 1.07 Gbp 205 1.08 Gbp
NG based on genome size 1.05 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 May 2021
bAcaChl1.alt.cur.20210526.fasta.gz (240.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 5.84 Mbp 13 5.84 Mbp
20 37 3.67 Mbp 37 3.67 Mbp
30 74 2.37 Mbp 74 2.37 Mbp
40 126 1.72 Mbp 126 1.72 Mbp
50 200 1.18 Mbp 200 1.18 Mbp
60 314 0.66 Mbp 314 0.66 Mbp
70 746 91.73 Kbp 746 92.01 Kbp
80 0 0
90 0 0
100 0 0
0.788x 2899 0.83 Gbp 2879 0.83 Gbp
NG based on genome size 1.05 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
bAcaChl1.MT.20191004.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.